Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acid345_4665 |
Symbol | |
ID | 4070710 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Koribacter versatilis Ellin345 |
Kingdom | Bacteria |
Replicon accession | NC_008009 |
Strand | + |
Start bp | 5522900 |
End bp | 5523757 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637986705 |
Product | rhomboid-like protein |
Protein accession | YP_593739 |
Protein GI | 94971691 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.545556 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGACGCA CATCGGGAAT GGAATTGAGC CTGCCGCCGT TTACGCCGGC AGTGACCTGG CTGTTGGGAA TCAATGTTGG CGTGTTCTTC GTGATCGAGT TGCTCTCGCT TGCGAAGATG GGTGGACCGC TCCACCTGTT GGCCTATGCC GCGCTCGTTC CATTCAACGT ACTGCACGGC CACGTGTATG AACTGGTCAC GTATTCGTTC CTTCATGCCG GCGGTATGCA CTTGTTCGGC AACATGCTGG GCCTTTGGAT GTTCGGATCT CAGATCGAAG GCGACTTTGG CACCCGGCGA TTTTTGTCGT TCTACTTCTG GTGCGTAGTA GGCGGAGCGC TCACGACTGT AGCCGTCTCC TACACCGGAA TCCTGGGTAT CTCGCCACTC TTGCCGACGA TCGGTGCTTC GGCAGGTGTG TATGGCATCC TGATCGCGTT TGGCGTACTG CACGCAGACC AGGAAATCTA TATGCTTCCC TTCCCGTTCA AAGTGAAGGC GAAGTATCTC GTCGGCATCC TGGTTGTGGT CACGCTCGCA TTCGCTTTGT CGGAGAGCAA CGGCACGTCG GGTGCTTCGA TCGCCTACGC CGCCCATCTC GGCGGACTGA TTTTCGGCTA CATCTACATC AAGGCCTTTG CGCGACGCGG AGCGAAGTCC CTGGTTTCCG AACAGTATTA CGGGATACGC AACGCGTATT ATCGCTGGAA GCGTAACCGC GCCAAGAAGA AGTTCGAAGT CTACATGCGC CAGCACAAGC GCGAGGACTA CTTCGACCAG TACGGAAACT TCAAAGACCC AAACAGCAAA GACGACAAAG GCAATGGCCA ATCGTCCGGC GGTGGATGGG TGAATTAA
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Protein sequence | MRRTSGMELS LPPFTPAVTW LLGINVGVFF VIELLSLAKM GGPLHLLAYA ALVPFNVLHG HVYELVTYSF LHAGGMHLFG NMLGLWMFGS QIEGDFGTRR FLSFYFWCVV GGALTTVAVS YTGILGISPL LPTIGASAGV YGILIAFGVL HADQEIYMLP FPFKVKAKYL VGILVVVTLA FALSESNGTS GASIAYAAHL GGLIFGYIYI KAFARRGAKS LVSEQYYGIR NAYYRWKRNR AKKKFEVYMR QHKREDYFDQ YGNFKDPNSK DDKGNGQSSG GGWVN
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