| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4564 |
|---|
| Symbol | |
|---|
| ID | 4071509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 5410711 |
|---|
| End bp | 5412585 |
|---|
| Gene Length | 1875 bp |
|---|
| Protein Length | 624 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637986604 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_593638 |
|---|
| Protein GI | 94971590 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0741611 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0567328 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCGCA GAATCCTGGC CCTCTTACTC ACGCTCACTA CCCTCTTTCC ATCGGCGTTT
GCCAAAGACA GATTTCAGCA GCCGGGGCCC GTGCATCTGG ACAAGGACGG CGAGAAGTGG
GCCGATAAGA CCTTGAAGAG CATGTCGCTC GAAGAGAAGG TTGGGCAGAT GTTCATGATC
TGGTCGAAGG CCCAGTTTGT GAACGTGCAG AGCCCGGATT TTCTCAAGCT GCGCGACACC
ATGGCGCGGT ATCACCTGGG CGGGTTCGGC GTGACCGTGA ATTTCGAAGA TGGGTTCCTG
TTCAAGACCG AGCCGTACGA GGCCGCGATG ATGATCAACG AGTTGCAGCA GGGCTCGGAG
ATACCGCTGA TCATTGCCGC CGATTTCGAG CGCGGGCTCT CGATGCGTCT GAAGGAAGCC
ACTGATTTCC CGCACGCGAT GGCGTTTGGG GCGACTAACA ATCCGGCGTA TGCGAAGGAG
TTTGGGCGGA TCACGGCGCT GGAGTCGCGC GCCATTGGCG TGGAGTGGAA CTGGTTTCCT
GATGCCGACG TGAATTCGAA CCCGGCAAAC CCGATCATCA ATACGCGCTC GTTTGGCGAG
GACCCGCAGG CGGTGGCGTC GATGGTGAAG GCCTACATCG AGGGCGCTCA TGCGGAAGGC
CTGCTCACGA CGGTGAAGCA CTTCCCCGGT CACGGCGACA CCGATACCGA CACACACCTG
GCTACAGCGC GAATCAATCA GCCGCTGGAG CATATCCAGA ACGTTGAGTT GGTGCCGTTC
AAGGCCGCGA TTGATGCGGG CGTGGACTCG GTGATGATCG GACATCTCGT GGTGCCGGCA
CTCGATCCCG ATACCAATCG GGTTGCGACT ATCTCGCCGA AGATCGTGAA CGGCACTCTC
AAGAAAGACC TCGGGTTCCA GGGGCTCGTC GTCACCGATG CAATGGAGAT GAACGGGCTG
GCGAAGCTGT TCGGCTTCGG GCCGGAAGGC TCGGCGCGAG CGGCCGTAGC GGCAGTGAAG
GCCGGTGATG ACATGCTTCT GCTGCCGTCG GACCTCGACG GCGCGTACGA AGGGCTGATC
AAAGCGGTGA AACGCGGCGA GATTCCGGAG TCGCGGATTG ACGAGTCGGT GCGGAAGATC
CTGCGGATGA AGGCTTCGGT GGGGCTGAAC AAGGCCAAGC TGGTAGACGT GGAGCAGATG
AAGAACCTCA TCGCGCGTCC GGATAGCCTG TCAGTGGCGC AGGAAATCGC GGATTCCGCG
GTGACACTGG TGCGCAGCAA CGACAAAACC CTGCCCCTGC GGGCGAAAAC AGTGGGAACC
AGCGGGCCTC ATGCAACGTA TGAGAAACCA GAGGGAGTCC GGGGAAGGCA GCTTGCGGTC
ATCATAACGG ATGATTCGCG GAGCGAGTCG GGCCGGATCT TCGATCAGCA GATTCGGCGG
CGATCGCCGG AGATGCGGAC CATCTGGGTG GATGATCGCA ACGCCGTGGG CATGAGCGAC
ACCGTATTGC AGGCGGTACG CGAGGCGGAG AAAGTTGTGG TCGCGATTTA CGCGATTCCC
AGCGCCGGAC GCGTGAAGGT GGAGAACGGC CAGTTCAAGG CCTCGAGCGA CATGAGCGAT
GCGCCGGCGG CGCTGGTGAA GAACATTTTG CGCGTAGCTG GGAGCCGCAC GGTGGTGGTC
GCAATGGGGA ATCCGTATCT GGCGCAGGAT TTCCCGGAAG TGCAGAACTA TATGTGCACG
TATTCCAATG CGCAGGTTTC AGACGTAGCG GCGGTGAAAG CGCTGTTCGG CGACATCGCT
ATTCGTGGTC ACCTGCCGGT GACGATTCCG CAGTTCGCCG AGCGCGGCGC GGGGATCCAG
CTACCGGCAA AGTAG
|
|---|
| Protein sequence | MIRRILALLL TLTTLFPSAF AKDRFQQPGP VHLDKDGEKW ADKTLKSMSL EEKVGQMFMI
WSKAQFVNVQ SPDFLKLRDT MARYHLGGFG VTVNFEDGFL FKTEPYEAAM MINELQQGSE
IPLIIAADFE RGLSMRLKEA TDFPHAMAFG ATNNPAYAKE FGRITALESR AIGVEWNWFP
DADVNSNPAN PIINTRSFGE DPQAVASMVK AYIEGAHAEG LLTTVKHFPG HGDTDTDTHL
ATARINQPLE HIQNVELVPF KAAIDAGVDS VMIGHLVVPA LDPDTNRVAT ISPKIVNGTL
KKDLGFQGLV VTDAMEMNGL AKLFGFGPEG SARAAVAAVK AGDDMLLLPS DLDGAYEGLI
KAVKRGEIPE SRIDESVRKI LRMKASVGLN KAKLVDVEQM KNLIARPDSL SVAQEIADSA
VTLVRSNDKT LPLRAKTVGT SGPHATYEKP EGVRGRQLAV IITDDSRSES GRIFDQQIRR
RSPEMRTIWV DDRNAVGMSD TVLQAVREAE KVVVAIYAIP SAGRVKVENG QFKASSDMSD
APAALVKNIL RVAGSRTVVV AMGNPYLAQD FPEVQNYMCT YSNAQVSDVA AVKALFGDIA
IRGHLPVTIP QFAERGAGIQ LPAK
|
|---|
| |