Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acid345_4528 |
Symbol | |
ID | 4070206 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Koribacter versatilis Ellin345 |
Kingdom | Bacteria |
Replicon accession | NC_008009 |
Strand | + |
Start bp | 5371739 |
End bp | 5374168 |
Gene Length | 2430 bp |
Protein Length | 809 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637986567 |
Product | ABC efflux pump, inner membrane subunit |
Protein accession | YP_593602 |
Protein GI | 94971554 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.697087 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTTCGT TTCGCGATCT TCGCTACGCC TGGCGCCAGT TGCGCCGCAG CCCTGGTTTC GCCATCGTTG CCATTTTGAC TCTGGCGCTC GGGATTGGCG CCAATACTGC CATTTTCAGC GCGGTGGATT CGGTCCTCCT CCGGCCTTTG CCCTTCCCAC ATCCCGAGAC TTTAGTTGCT CTCCAAGCCG ATACCCCGTA TCCGAAGGGC TGGGTGCGCG AATACCAACG GCAGGGCAGC GGGTTCGCGT TCGTCTCCGG GTACTCGCTG AATCAGGAGT ACAACCTCGC CGGCACCAAC GCCTCCGACC GCACTTACGG CAGTACGGTC AGCGTGAACT TCTTCGATAC GCTTTCTGTG CAGCCGCTGC TCGGACGCTT CTTTAGTCCG GAAGAGGAAC GCTCTGGCCA GGATCGCGTG GTAGTGCTGT CCTATGCGTT CTGGCGAAGT CACTTCGGCG CTAATCCGAG TATTGTTGGC TCGACGGTGC ACGTCGACGG CATTCCGCGA CAAGTACTCG GCGTCGCTCC CAAGAATGTC CGCTTTCCCG ATAACGATAC CCAGATCTGG CTACCGATTT CATTTGACGA CTCCAAGCAG AACGATCCTT GGGCCACGTT TTTCAATCTC CGAGCGATCG GGCGCCTCAA ACCCGGCGTG ACCGCCAACG CGGCACAGGC ACAACTACGC ACAATTCACC CACAGATGTT GGCTCTCTTC CCGTGGCGCA TGCCCGACAA ATGGGCCGCC GACATCAGCG TGCGCCCGTT GCTGGACTCC ATCGTCGGCG AAAGCGCACC GAAGTTCTAT CTCCTGCTGG GAGCCGTTGG TTTGGTGCTG CTGATTGCGT CTGCCAACGT CGCGAACCTG CTACTGGCAC GCGCCGCGTC TCGCCAACGT GAGATTGCGA TTCGCAGTGC GCTCGGCGCG AGCATTCCCC GGCTCGTTCG ACAGTTGCTT ACTGAGAGTC TTTTGCTATC CGTATTTGCG GGAGTAGTAG GTGTGCTGTT GGCGTGGGCA GGACTGAGAA TTCTCAAGAT TATTCTGCCG CCGGAGACAC CACGCCTTGC CGATATCTCT CTGCATCCCG GCGTCTTGAT GTTCGCAGCC GCGGTCTCAC TGTTGACCGG AATTCTCGCC GGCCTCGTGC CCGCCTGGAA TTCCGCCAGC GATGTGCAGG AGAAACTGCG CTCCAACGCA AACAATGTCT TCGGAACCGC CAAGCGATTC TCCATTTCGC GCATGCTGGT GATTGGCCAA GTGGCAATCG TGGTCGTAGT GATCCTCGCT GCCGGCGTGA TGTTGCGCAG CTTGTATCGT CTCGCGAGCG TGAATCCGGG ATTCGAAGTG CAGCATGTGG TTGGTGTGCA GGTCTCGCTC GACCGCAAAG CTTGCGATAT TCGCGGCAAC TGTGCCAACT TCTTCCACAA TTTGCTGGAG CGCGCGCAAG CGCTGCCGGG CATTGAGAAG GCCGCTATTG TCGATACCCT GCCCATGGGC GGCGACGATC TCTGGTATGT CTTCGACGCC GAAAACCATC CCCGAGAGGC GCGACAACCA GCTAACGTTT CGGCCGGGCG CATCGCATCC GACGGCTATT TCCGGCTGAT GGGTATCTCA CTGCTGCAAG GCCGATACTT CGATCAAAGC GACGCTTCGG GCTCCAGTCG CGCGGTGATC GTGAATGCCG CGATGGCTTC GCATTTCTGG CCAGGACAGA ATCCGATCGG CAAACGCATC GTCCACACCG ATAACGAATC CTCTCCCGGA GTGATCGATC CAGAAACCGC TTCGGTGATC GTTGGCGTCG TATCGGATAC ACGTCACGAG CGACTGGATC GTGATTCGGG ATGGGAGGTC TACCTTCCAC TCGCGCCGAA TCGTGAATTC TCGACGATGA ATCTTGTCGT GCGTTCCAGC ACCAACGTGT CTGGTGTCGC GGGTTCCGTT CGGCAACTCG TGACTGAAAT CGATCCCACC GCCACCGTCG CGCACGTCCG CACTCTCGAC GAAGTGCTCA CCGCATCCAC CGCCAACTCT CGCTCACTCA CCTTCCTGCT GGTCGCATTC GCCGCACTCG GCGCGGCCGT CGGGGGAATG GGCATCTACA GTCTTATCGC CTACACCGTA AGCTGGCGTA CGCGCGAAAT CGGCCTCCGC CTTGCGCTTG GAGCCAATAA ACGTCAAGTT GCAATTCTGG TGTTAAAACA GAGCCTCGCG CTGAGTCTGA CCGGTTCGGC AGTCGGGGTT TCAGCCGCAT ATCTGTGCCG AAATCTGATG CGCAGCTTTC TGTTCCAGAC TAGCCCCACG GATCTGCTGA CGTTCGTCGC CGTCCCGTTG ATGGTGGGAG TTGTTGCTTT GGTCGCCTCA TGGGTTCCGG CACGCCGGGC GATGAGGATT GATCCCATGC AGGCGCTGCG GTTCGAATAG
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Protein sequence | MISFRDLRYA WRQLRRSPGF AIVAILTLAL GIGANTAIFS AVDSVLLRPL PFPHPETLVA LQADTPYPKG WVREYQRQGS GFAFVSGYSL NQEYNLAGTN ASDRTYGSTV SVNFFDTLSV QPLLGRFFSP EEERSGQDRV VVLSYAFWRS HFGANPSIVG STVHVDGIPR QVLGVAPKNV RFPDNDTQIW LPISFDDSKQ NDPWATFFNL RAIGRLKPGV TANAAQAQLR TIHPQMLALF PWRMPDKWAA DISVRPLLDS IVGESAPKFY LLLGAVGLVL LIASANVANL LLARAASRQR EIAIRSALGA SIPRLVRQLL TESLLLSVFA GVVGVLLAWA GLRILKIILP PETPRLADIS LHPGVLMFAA AVSLLTGILA GLVPAWNSAS DVQEKLRSNA NNVFGTAKRF SISRMLVIGQ VAIVVVVILA AGVMLRSLYR LASVNPGFEV QHVVGVQVSL DRKACDIRGN CANFFHNLLE RAQALPGIEK AAIVDTLPMG GDDLWYVFDA ENHPREARQP ANVSAGRIAS DGYFRLMGIS LLQGRYFDQS DASGSSRAVI VNAAMASHFW PGQNPIGKRI VHTDNESSPG VIDPETASVI VGVVSDTRHE RLDRDSGWEV YLPLAPNREF STMNLVVRSS TNVSGVAGSV RQLVTEIDPT ATVAHVRTLD EVLTASTANS RSLTFLLVAF AALGAAVGGM GIYSLIAYTV SWRTREIGLR LALGANKRQV AILVLKQSLA LSLTGSAVGV SAAYLCRNLM RSFLFQTSPT DLLTFVAVPL MVGVVALVAS WVPARRAMRI DPMQALRFE
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