Gene Acid345_4528 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAcid345_4528 
Symbol 
ID4070206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Koribacter versatilis Ellin345 
KingdomBacteria 
Replicon accessionNC_008009 
Strand
Start bp5371739 
End bp5374168 
Gene Length2430 bp 
Protein Length809 aa 
Translation table11 
GC content59% 
IMG OID637986567 
ProductABC efflux pump, inner membrane subunit 
Protein accessionYP_593602 
Protein GI94971554 
COG category[V] Defense mechanisms 
COG ID[COG0577] ABC-type antimicrobial peptide transport system, permease component 
TIGRFAM ID[TIGR03434] Acidobacterial duplicated orphan permease 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.697087 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTCGT TTCGCGATCT TCGCTACGCC TGGCGCCAGT TGCGCCGCAG CCCTGGTTTC 
GCCATCGTTG CCATTTTGAC TCTGGCGCTC GGGATTGGCG CCAATACTGC CATTTTCAGC
GCGGTGGATT CGGTCCTCCT CCGGCCTTTG CCCTTCCCAC ATCCCGAGAC TTTAGTTGCT
CTCCAAGCCG ATACCCCGTA TCCGAAGGGC TGGGTGCGCG AATACCAACG GCAGGGCAGC
GGGTTCGCGT TCGTCTCCGG GTACTCGCTG AATCAGGAGT ACAACCTCGC CGGCACCAAC
GCCTCCGACC GCACTTACGG CAGTACGGTC AGCGTGAACT TCTTCGATAC GCTTTCTGTG
CAGCCGCTGC TCGGACGCTT CTTTAGTCCG GAAGAGGAAC GCTCTGGCCA GGATCGCGTG
GTAGTGCTGT CCTATGCGTT CTGGCGAAGT CACTTCGGCG CTAATCCGAG TATTGTTGGC
TCGACGGTGC ACGTCGACGG CATTCCGCGA CAAGTACTCG GCGTCGCTCC CAAGAATGTC
CGCTTTCCCG ATAACGATAC CCAGATCTGG CTACCGATTT CATTTGACGA CTCCAAGCAG
AACGATCCTT GGGCCACGTT TTTCAATCTC CGAGCGATCG GGCGCCTCAA ACCCGGCGTG
ACCGCCAACG CGGCACAGGC ACAACTACGC ACAATTCACC CACAGATGTT GGCTCTCTTC
CCGTGGCGCA TGCCCGACAA ATGGGCCGCC GACATCAGCG TGCGCCCGTT GCTGGACTCC
ATCGTCGGCG AAAGCGCACC GAAGTTCTAT CTCCTGCTGG GAGCCGTTGG TTTGGTGCTG
CTGATTGCGT CTGCCAACGT CGCGAACCTG CTACTGGCAC GCGCCGCGTC TCGCCAACGT
GAGATTGCGA TTCGCAGTGC GCTCGGCGCG AGCATTCCCC GGCTCGTTCG ACAGTTGCTT
ACTGAGAGTC TTTTGCTATC CGTATTTGCG GGAGTAGTAG GTGTGCTGTT GGCGTGGGCA
GGACTGAGAA TTCTCAAGAT TATTCTGCCG CCGGAGACAC CACGCCTTGC CGATATCTCT
CTGCATCCCG GCGTCTTGAT GTTCGCAGCC GCGGTCTCAC TGTTGACCGG AATTCTCGCC
GGCCTCGTGC CCGCCTGGAA TTCCGCCAGC GATGTGCAGG AGAAACTGCG CTCCAACGCA
AACAATGTCT TCGGAACCGC CAAGCGATTC TCCATTTCGC GCATGCTGGT GATTGGCCAA
GTGGCAATCG TGGTCGTAGT GATCCTCGCT GCCGGCGTGA TGTTGCGCAG CTTGTATCGT
CTCGCGAGCG TGAATCCGGG ATTCGAAGTG CAGCATGTGG TTGGTGTGCA GGTCTCGCTC
GACCGCAAAG CTTGCGATAT TCGCGGCAAC TGTGCCAACT TCTTCCACAA TTTGCTGGAG
CGCGCGCAAG CGCTGCCGGG CATTGAGAAG GCCGCTATTG TCGATACCCT GCCCATGGGC
GGCGACGATC TCTGGTATGT CTTCGACGCC GAAAACCATC CCCGAGAGGC GCGACAACCA
GCTAACGTTT CGGCCGGGCG CATCGCATCC GACGGCTATT TCCGGCTGAT GGGTATCTCA
CTGCTGCAAG GCCGATACTT CGATCAAAGC GACGCTTCGG GCTCCAGTCG CGCGGTGATC
GTGAATGCCG CGATGGCTTC GCATTTCTGG CCAGGACAGA ATCCGATCGG CAAACGCATC
GTCCACACCG ATAACGAATC CTCTCCCGGA GTGATCGATC CAGAAACCGC TTCGGTGATC
GTTGGCGTCG TATCGGATAC ACGTCACGAG CGACTGGATC GTGATTCGGG ATGGGAGGTC
TACCTTCCAC TCGCGCCGAA TCGTGAATTC TCGACGATGA ATCTTGTCGT GCGTTCCAGC
ACCAACGTGT CTGGTGTCGC GGGTTCCGTT CGGCAACTCG TGACTGAAAT CGATCCCACC
GCCACCGTCG CGCACGTCCG CACTCTCGAC GAAGTGCTCA CCGCATCCAC CGCCAACTCT
CGCTCACTCA CCTTCCTGCT GGTCGCATTC GCCGCACTCG GCGCGGCCGT CGGGGGAATG
GGCATCTACA GTCTTATCGC CTACACCGTA AGCTGGCGTA CGCGCGAAAT CGGCCTCCGC
CTTGCGCTTG GAGCCAATAA ACGTCAAGTT GCAATTCTGG TGTTAAAACA GAGCCTCGCG
CTGAGTCTGA CCGGTTCGGC AGTCGGGGTT TCAGCCGCAT ATCTGTGCCG AAATCTGATG
CGCAGCTTTC TGTTCCAGAC TAGCCCCACG GATCTGCTGA CGTTCGTCGC CGTCCCGTTG
ATGGTGGGAG TTGTTGCTTT GGTCGCCTCA TGGGTTCCGG CACGCCGGGC GATGAGGATT
GATCCCATGC AGGCGCTGCG GTTCGAATAG
 
Protein sequence
MISFRDLRYA WRQLRRSPGF AIVAILTLAL GIGANTAIFS AVDSVLLRPL PFPHPETLVA 
LQADTPYPKG WVREYQRQGS GFAFVSGYSL NQEYNLAGTN ASDRTYGSTV SVNFFDTLSV
QPLLGRFFSP EEERSGQDRV VVLSYAFWRS HFGANPSIVG STVHVDGIPR QVLGVAPKNV
RFPDNDTQIW LPISFDDSKQ NDPWATFFNL RAIGRLKPGV TANAAQAQLR TIHPQMLALF
PWRMPDKWAA DISVRPLLDS IVGESAPKFY LLLGAVGLVL LIASANVANL LLARAASRQR
EIAIRSALGA SIPRLVRQLL TESLLLSVFA GVVGVLLAWA GLRILKIILP PETPRLADIS
LHPGVLMFAA AVSLLTGILA GLVPAWNSAS DVQEKLRSNA NNVFGTAKRF SISRMLVIGQ
VAIVVVVILA AGVMLRSLYR LASVNPGFEV QHVVGVQVSL DRKACDIRGN CANFFHNLLE
RAQALPGIEK AAIVDTLPMG GDDLWYVFDA ENHPREARQP ANVSAGRIAS DGYFRLMGIS
LLQGRYFDQS DASGSSRAVI VNAAMASHFW PGQNPIGKRI VHTDNESSPG VIDPETASVI
VGVVSDTRHE RLDRDSGWEV YLPLAPNREF STMNLVVRSS TNVSGVAGSV RQLVTEIDPT
ATVAHVRTLD EVLTASTANS RSLTFLLVAF AALGAAVGGM GIYSLIAYTV SWRTREIGLR
LALGANKRQV AILVLKQSLA LSLTGSAVGV SAAYLCRNLM RSFLFQTSPT DLLTFVAVPL
MVGVVALVAS WVPARRAMRI DPMQALRFE