| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4240 |
|---|
| Symbol | |
|---|
| ID | 4073167 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 5027197 |
|---|
| End bp | 5028888 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637986272 |
|---|
| Product | nickel-dependent hydrogenase, large subunit |
|---|
| Protein accession | YP_593314 |
|---|
| Protein GI | 94971266 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAC GAATCACCAT CGATCCGATC ACCAGAATTG AAGGCCACCT CCGCGTAGAT
GTCCAAGTGG ACAACAACTC GGTCACAAAC GCCTGGGCCT CGTGCACTAT GTGGCGCGGC
ATTGAAAACA TCCTCAAGGG CCGTGACCCC CGCGATGCAT GGCTCTTCAC CCAGCGTTTC
TGCGGTGTGT GCACCACCGT GCACGCGATG GCCAGCGTCC GCGCGGTAGA GGATGCGTTG
AAGCTGGAGA TCCCGCTAAA CGCGCAATAC ATCCGCAACC TCATTCTGAT TGCCCACGCG
CTGCACGATC ACATCGTGCA TTTCTACCAG CTCTCGGCTC TCGACTGGGT TGATGTCATG
CAGATTCCGA AAGCCGATCC TGCCGCGACT TCAAAGCTCG CCGAGAGCCT TTCGCCATGG
TTCCGCAACT CGCGCAACGA ACTCAAGCAG GCGCAGGACC GCGTGAACGC TGTTGCTGCC
AGCGGCCAGC TCGGCATCTT CGCCAACGGC TACTGGGGAC ACCCAGCGAT GCGCCTCTCG
CCCGAGGTGA ATCTGCTTGC CTTCTCGCAC TACATGCAGG CGCTGGAGTA TCAGCGCAAA
GCGCTGCAGA TCGTCGGCAT CCTCGGCTCA AAGACACCGC ACATCCAGAA CCTCACGCCC
GGTGGTGTCT CGAACGCGAT TGATCTCGAT AGTCAGTCGG CGCTGAACAT GGAGCGCCTT
GAGATGATCC GCGGCCTCTT TGCAGAGGTC TCGCGTTTCA TCAACGAGGT TTACCTCGTG
GATGTCTGCG CTGTAGCTTC GATGTACCCC GAGTGGTTCA ATATCGGCAG CGGCGTCACC
AATTACCTCG CCGTTCCGGA CTTGCCGCTC GACAGCCGCG GTTCCAGCTA CGATCTTCCG
GGCGGCTACA TCGGTGCAGG AGGACTGAAA TCGTTCCAGA CTGCTTCTGA CGACGCCTTC
CGCAAAGGCG TGACCGAAGA CGTAACCCAC GCCTACTACT CGGGCGATAA ACCGCTTCAT
CCCTGGGAAG GCGAGACTAA CCCGCAGTTC ACCGGCTGGA ACGGTGACGA GAAGTACTCC
TGGGTGAAGG CGCCACGCTT CAACGGCGAT CCTGCGCAGG TCGGTCCACT GGCACAGGTG
CTGATCGGTT ACACCCAAGG TCACGCGCTC ACCAAGAAGT ATGTCGGCCT AGCTGCGGAG
AAGGTTCATG CCGTCAGCGG CATCCAACTG CAACCGGCAA TGCTCCACTC CACTCTCGGC
CGCCACGCCG CGCGCGCCAT CCGCGCCGGC ATGCTCGCCG AGTTGGCGCA AAAGCATCTT
GACCTGCTCA CCAACAACAT CGCAAAGGGT GACTACTCCG TCTACAACGC ACCGGTCTTC
CCCAGCCACG AAGTAGAAGG TGTCGGCACC CACGAAGCTC CGCGCGGTAC GCTCTCGCAC
TGGATTGTGA TCAAAGACGA GAAGATCAAG AATTACCAGG CCGTCGTTCC TTCGACCTGG
AACGCCAGCC CGCGCGACCA AAAGAACGCG CATGGCCCGT ACGAGGCATC GCTACTGCAC
ACGCCGCTAG CGCGCCCGCA AGAGCCACTT GAGGTCTTGC GCACCATTCA CTCGTTCGAT
CCGTGCATGG CTTGTGCCTG CCACACCTTC GATCCATCCG GAAACAAGAT CGCAGCGGTC
AATATTTTAT GA
|
|---|
| Protein sequence | MAKRITIDPI TRIEGHLRVD VQVDNNSVTN AWASCTMWRG IENILKGRDP RDAWLFTQRF
CGVCTTVHAM ASVRAVEDAL KLEIPLNAQY IRNLILIAHA LHDHIVHFYQ LSALDWVDVM
QIPKADPAAT SKLAESLSPW FRNSRNELKQ AQDRVNAVAA SGQLGIFANG YWGHPAMRLS
PEVNLLAFSH YMQALEYQRK ALQIVGILGS KTPHIQNLTP GGVSNAIDLD SQSALNMERL
EMIRGLFAEV SRFINEVYLV DVCAVASMYP EWFNIGSGVT NYLAVPDLPL DSRGSSYDLP
GGYIGAGGLK SFQTASDDAF RKGVTEDVTH AYYSGDKPLH PWEGETNPQF TGWNGDEKYS
WVKAPRFNGD PAQVGPLAQV LIGYTQGHAL TKKYVGLAAE KVHAVSGIQL QPAMLHSTLG
RHAARAIRAG MLAELAQKHL DLLTNNIAKG DYSVYNAPVF PSHEVEGVGT HEAPRGTLSH
WIVIKDEKIK NYQAVVPSTW NASPRDQKNA HGPYEASLLH TPLARPQEPL EVLRTIHSFD
PCMACACHTF DPSGNKIAAV NIL
|
|---|
| |