| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_3429 |
|---|
| Symbol | ligC |
|---|
| ID | 4070313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 4049479 |
|---|
| End bp | 4050603 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637985451 |
|---|
| Product | ATP-dependent DNA ligase |
|---|
| Protein accession | YP_592504 |
|---|
| Protein GI | 94970456 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGTC GCTCCGCAGT TAAGAAGTCA CCGAAGCTCT CCGACGGCGC CGTTTCCGCC
GAAGACTTAA AGCAACAGTT TCAAAAGTTA AAGCTCCCCA TCCAGCCGCC TTTCCCGCCG
ATGGAAGCCA AGCTGGTGGA CGCCATTCCC GAAGGCGCGC TCTGGCAATA CGAGCCCAAG
TGGGATGGCT TCCGCTGCGT GGCGTTCCGC GATGGCGACA CCGTCGAGTT GCAATCCAAA
GCCGGGCAGC CGCTCGGCCG TTACTTCCCG GAAATCGTGG AAGCGTTGCT GAAGCTCAAG
CCGACAGAGT TCGTGCTCGA TGGGGAGATC GTGATCCTGC GCAACGGCCA CCTCTCGTTC
GACGATCTGC TCATGCGCAT TCATCCCGCG GCAAGCCGGA TCAAGAAGCT TTCGGTGGAG
ACCCCAGCGA CCTATCTCGT GTTCGATCTT CTCGTGGATG ACAAAGCGCA TTCGCTCGTC
GAAGAAACGC AGGCCGCCCG CCGCGAACGC CTCGAGCTGT TCTTCAAGAC GTTCAAGGGA
AACGCGAGCG TCCGCCTCTC TCCCATGACC CGCGATCACG CCGAAGCTGA GAAGTGGATG
AAGAAACTGG CTGTCATTGG ATTCGATGGC GTGGTGGCGA AAGCGCTCGA CCAACCGTAT
CAATCGGGCG AGCGCGCCAT GCGCAAGATC AAACGCATTC GCACCGCTGA TTGCGTCGTC
GGCGGATTCC GCTACGCGTC GAAAGGCGGC GAGGTCGGCT CGCTCCTGCT CGGCGTCTAC
AACGACGAAG GCCAACTCGA CCACATCGGC TTCAGCTCCA GCTTTGCAAG GGAAGAGCGC
AAACAGTTAA AGAAGATCTT GAAGCCCTAC ATGAACGGCG AAGGCTTTAC CGGCAAAGCT
CCGGGCGGCC CGAGCCGATG GAGCACAGAG CGTACCGGCG AGTGGGAGCG GCTCGATCCC
AAACTCGTCT GCGAGGTCAG CTACGACCAC TTCTCCGGCG GACGCTTTCG CCACGGCACC
AAGTTCCTGC GCTGGCGTCC GGAGAAAGAA CCGAAGAGCT GCACCTATGA GCAGATCACG
CCAGCAAAAC AACGCGGCTC AATGGACCAA TTCCTCGCGG CCTAG
|
|---|
| Protein sequence | MPRRSAVKKS PKLSDGAVSA EDLKQQFQKL KLPIQPPFPP MEAKLVDAIP EGALWQYEPK
WDGFRCVAFR DGDTVELQSK AGQPLGRYFP EIVEALLKLK PTEFVLDGEI VILRNGHLSF
DDLLMRIHPA ASRIKKLSVE TPATYLVFDL LVDDKAHSLV EETQAARRER LELFFKTFKG
NASVRLSPMT RDHAEAEKWM KKLAVIGFDG VVAKALDQPY QSGERAMRKI KRIRTADCVV
GGFRYASKGG EVGSLLLGVY NDEGQLDHIG FSSSFAREER KQLKKILKPY MNGEGFTGKA
PGGPSRWSTE RTGEWERLDP KLVCEVSYDH FSGGRFRHGT KFLRWRPEKE PKSCTYEQIT
PAKQRGSMDQ FLAA
|
|---|
| |