| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1708 |
|---|
| Symbol | |
|---|
| ID | 4070491 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 2071788 |
|---|
| End bp | 2074454 |
|---|
| Gene Length | 2667 bp |
|---|
| Protein Length | 888 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637983716 |
|---|
| Product | ABC efflux pump, inner membrane subunit |
|---|
| Protein accession | YP_590783 |
|---|
| Protein GI | 94968735 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.232779 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCGAC GGAAACGCAG CGCGAAAGAT TTTGAAGAGG AAATCCAGGC GCACCTCGAG
TTAGAAGCGG ACGACCTGCG GGGCGAAGGT CTAAGTGAAG GTGAAGCGCG CCGGAGAAGC
CGAGTTGAGT TCGGCAATGT AGGCGCCGCG GAGGAGCGGT TCTACATGAA GGACCGCTGG
GCAGCACTGG AAAACGCGAT TCGACGGGTC CGGTTCGCGT GGAGGTCGCT GGCGCAGAGC
CCGGGCTTTA CGATCACCGC GATCCTGACA TTGGCGCTCG GCGTGGGCGC GAATACTGCG
GTCTTCAGTG TAATGAATGC GGTGCTGCTG CGGTCGCTGC CGGTGGAAGA TCCGGAGCGC
GTGGTGTACC TGCGCACATC GAATACGCCG AGCTCGGTCG GCACGATCAG TTCCACGGAG
ACATTTTCGT ATGTGGTGTT CGACGCGCTG CGTCGAGAAG GCAAGGGCCT TGCGCCGGTG
ATGGCGTTTG CGCCGTTGTC GAACGACAAG GTTTCGGTTC GTTATGGCGC CCAACCGGAA
ACGGCGGAAG GCGACACGGT GAGTGGCGGG TATTTTTCGG GCCTGGGCGT GAAGCTGCCG
CTGGGGCGAG GCTTCACGGA CGAAGATGAG CGCACGCACG CGCCGATTGT GGTGCTGAGC
CACAAGTATT GGGTGCGGCG CTTTGCGAGC GATCCGAAGG TGCTCGGGCA GACGTTCCAC
GTGAACGGCG CGCCGATGAC GATTGTGGGG GTGGCGGCGA ACGGCTTTGA AGGAACTGAG
GCCGCCTCGT CGACGGAGTT TTGGATCCCC TTCCAGAGCC GGCCCGAGTT GAATGCATAT
GGCAATGCTC CGGAAAACGG GAAAACTTTC ATCAACAATC CGAAGTGGTG GTGCTTGCAC
CTGATCGGCA GGATTGCGCC GGGCATGACA CACGCACGAG CGGTCGCGGA GTTGCAGCCC
GTGTTTCAGC GCGCGGCATC TGAAGGATTG GGCACGCCCA AGCCGGAGGA AAAGCTGCCG
GTGCTGAGCT TCGCTGACGC GAAGAGTTTT CCAGGATACG ACGAGGAGTA CGGAAAGCCA
CTACGCATGT TGATGGCGAT GGTGGTCCTG GTGCTCGTTA TCGCGATGGC GAACGTGGTG
ATGCTGCTGC TGGCGAGGAA TGCGCACCGT CGGCGGGAGT TTGCGCTGCG ACAGGCGTTG
GGAGCGGGAC GCGGCGATCT GTTCCACCAG TTGGTGACGG AGAGCATTCT GCTGGTGACG
GCGGGTGGAG CGCTGGCCTG GGCGTTCGCA GTAATGGCGA CACGGTTGTT GGCGAACTGG
GCGCACATTG AATCTACGCT CGCCCCGGAC CGATCGGTGA TGCTGTTCAC ACTGGTGGTG
CTCACGATTG CGTTGTTCGT GTTCGCGTTA ATTCCGTTGC GCATGGTTTT GGCGAGCGGA
GCGGAACAAG CGCTGAAGGT TTCGTCGGCG ACGGCGCAGA CGGACGCGGG AAGGTCGCGG
ACGGGGAAGA TCATCGTGAC GCACCAGATG TCGTTGTGCC TGGTGCTGCT GGTGGGAGCG
GGACTGCTGG TGCGCACGCT AAGAAACCTC GAAAGCACTC CCATCGGAAT GCAGTTGGAT
GGATTGGTAG TGTTTGGAGT GAAGCCGGAC ATCAAATCCG TGCCGCAAGG TGTGGCGTTC
TACGTGGACC TGATGAACCG CCTGCGAGCA CTGCCCGGCG TGCAAAACGT CACGGTGATG
GAAGAGCGCA TCGGCACCTG GTGGTCGAAC AACTTCAACA TGCTGGTTGA CGGGAAGCTG
CCGGAAGTTG CGAATGGCGC CGCACGGACA GTGCGCAACA ACACTGTGGG GCCAAAGTTT
TTCACGACAC TGGGCGTGCC GATTCTCGAG GGACGAGACT TTGCGGATTC CGATACTGCG
AGTTCGCCGC GGGTGGGGAT CATCAACGAG GAGTTTGCGC GGAGGTTCCT GCCGAACCAG
AATCCGCTGG GTCATTTGAT TGGTCCGGCC GATTTGCCTT CGTTCCAGAT GACGATCGTG
GGCGTGGTGA AGGACCACAA GTATCGCAGC ATTACGGAGA CGCCGATACC GATGGCGTGG
TTCAACTACG CGCAGATCCC GATGATTGGG TCCATGCACG TGGAGATGCG AGTCTCGGGG
CCGCCGCTAG CGATTTTGCC GTCGGTGCAG AAGACAGTGC TGGAGATAGA CCCGAACCTG
CCGCTGCTTC GTCCGATTAC GCAGCGAGCG CAGTACGACC TGACGATTTC GAACGAAATC
CTCTTTGCGC GCCTGGCGGG ATTTTTCGGG CTGCTCGCAG TGGTGCTGGT GGCGACGGGG
CTGTATGGAA CACTTGCGTA CCGAGTGAGC ATGCGGACGG CGGAGATTGG CGTGCGCATG
GCGATTGGTG CACGACGCGG GCAAGTGGTA TGGATGATTT TGCGCGACAG CTTCCGGTTG
ACGGCGATTG GGGTGGGGAT TGGGATTCCG CTGGCGATGC TGGTGGGCAA TGCGCTGGCG
AGTTCGTTGT ATGGCGTGAA GCCGATGGAT GCTGCGAGCT ACCTGGGCGC GATGGTCGCC
GTGGGAGTGG TAGCACTGGC GGCGAGCGCG ATTCCGGCGG CGCGGGCGGC GAATGTGAAT
CCGTTGCGGG CGCTGCGGGC GGAGTAG
|
|---|
| Protein sequence | MFRRKRSAKD FEEEIQAHLE LEADDLRGEG LSEGEARRRS RVEFGNVGAA EERFYMKDRW
AALENAIRRV RFAWRSLAQS PGFTITAILT LALGVGANTA VFSVMNAVLL RSLPVEDPER
VVYLRTSNTP SSVGTISSTE TFSYVVFDAL RREGKGLAPV MAFAPLSNDK VSVRYGAQPE
TAEGDTVSGG YFSGLGVKLP LGRGFTDEDE RTHAPIVVLS HKYWVRRFAS DPKVLGQTFH
VNGAPMTIVG VAANGFEGTE AASSTEFWIP FQSRPELNAY GNAPENGKTF INNPKWWCLH
LIGRIAPGMT HARAVAELQP VFQRAASEGL GTPKPEEKLP VLSFADAKSF PGYDEEYGKP
LRMLMAMVVL VLVIAMANVV MLLLARNAHR RREFALRQAL GAGRGDLFHQ LVTESILLVT
AGGALAWAFA VMATRLLANW AHIESTLAPD RSVMLFTLVV LTIALFVFAL IPLRMVLASG
AEQALKVSSA TAQTDAGRSR TGKIIVTHQM SLCLVLLVGA GLLVRTLRNL ESTPIGMQLD
GLVVFGVKPD IKSVPQGVAF YVDLMNRLRA LPGVQNVTVM EERIGTWWSN NFNMLVDGKL
PEVANGAART VRNNTVGPKF FTTLGVPILE GRDFADSDTA SSPRVGIINE EFARRFLPNQ
NPLGHLIGPA DLPSFQMTIV GVVKDHKYRS ITETPIPMAW FNYAQIPMIG SMHVEMRVSG
PPLAILPSVQ KTVLEIDPNL PLLRPITQRA QYDLTISNEI LFARLAGFFG LLAVVLVATG
LYGTLAYRVS MRTAEIGVRM AIGARRGQVV WMILRDSFRL TAIGVGIGIP LAMLVGNALA
SSLYGVKPMD AASYLGAMVA VGVVALAASA IPAARAANVN PLRALRAE
|
|---|
| |