| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1633 |
|---|
| Symbol | |
|---|
| ID | 4072520 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 1981254 |
|---|
| End bp | 1983158 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637983642 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_590709 |
|---|
| Protein GI | 94968661 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1232] Protoporphyrinogen oxidase |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00578112 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.776269 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACA AAAAGCGGGA CTGCGCCCTT GGCATGGACC GCAGCATTAC GCGCCGCGAC
TTCCTGAACG GCGTGGCCCT CACCGTCGGT GGCGCACTGG TCGCGCCGAA TCTCCTCAAC
GCAACCGAAA AAGGTTCCAG TTCCGAGTAT TACCCTCCGG CGCTGATGGG CTTGAGGGGT
AATCACGAGG GGACCTACAC CTACGCTCAC GAACTTCGAG ATGGTGTCTT TCAGGAAAGC
GCGCAGCCGC TAAAGACAGA TGAAGACTAC GATCTCGTGA TCGTTGGCGG CGGCATCAGC
GGCCTCGCGG CAGCACATCT CTATCGCAAG AAGGCCGGCA AGAACGCAAA AATCCTGATT
CTCGACAATC ATGACGACTT CGGAGGACAT GCGAAGCGCA ATGAATTTCG CGCCGCGAAT
CGAATGCTAC TCGGCTACGG TGGAACCCAG TCAATCGAGA GCCCGTCAGA GTACAGTCCG
GCTGCCAAGC AGGTCTTGAA AGATCTCGGC ATCGAGACCA AACGGTTCTA CAAGGATTAC
GACCAGAAGC TTTATTCCCA CCTCGGCACA GCGAATTTCT TCGACAAAGA AACTTTTGGG
CAGGACAAGC TCGTTACCGC GATGTTCGAA ACCCCTTGGC AGGAGTGGGT GAAGCAAACT
CCCCTCTCGG AAGCCGCGAA GCGTGATATC GCGCGCGTTT ATACCGAGAA GGTCGACTAC
CTTCCGGGTC TGAGCCCGAA AGAGAAACGT GCGAAGCTCG CCAAAATCAG CTACGCCGAT
TACCTCACGA AATATGCGAA GTGCACGCCG GAAGTGTTGC CGTTTTTCCA GTCGCGAACT
AACGATTTGT TCTGCGTGAA CATCGATGCC GTACCCACGC TCGCGATCCT CGAAGCCGGT
GATGATTATG GCATCCCCTA CGCGGGGCTC GACGGCCTCG GCTTCGGCAA TCAAAGCCAA
GGGCGAAGCG AGCATAAGCA AGAGCCGTAC ATCTTCCACT TCCCCGACGG CAACGCCTCT
GTCGCGCGTC TGCTCGTGCG TGCCCTCATG CCGGGTGCGA TCCCCGGCGA CAGCATGGAG
GACGTCGTCA CCGCCAAGGC CGATTACAGC ACTCTCGACC GCGCCGACTC ACCCGTACGC
ATTCGCCTCA ACAGCACCGT GGTCCGGGCG AAACACGTTG GCGACGTGGC CACATCGAAG
CAAGTTGAAG TGCAGTACAT GCGAGACGGG AAGTTGCAGA GCGTTACCGG CAAAGCGTGC
ATCATGGCTT GTTACAACAT GATGGTTCCT TATCTCTGCC CTGAATTACC GCAGGTGCAG
AAAGATGCGC TCGCCGAGGG CGTAAAAGCT CCCCTCGTCT ACACTCACGT GGCAATACGC
AATTGGGATA TCTTCGACAA ACTGAAGATG TGGCAAGTCT GCTGTCCCGG CAGCTACCAC
GTATATGTCG CGCTCGATTT TCCAGTTAGC ATCGGCGAAT ACAAATTCCC GAGCAAACCC
AGCGAGCCCA TGGTGCTCTT CATGTTGCGC ACGCCTTGCA AGCCGGGCCT ATCGCAGAAG
GACCAGTATC GAGCTGGTCG CATGGAGCTT TTCACGACGC CATACGAGAC GTTCGAGCGT
AATATTCGCG AGCAGCTATC GCGGATGTTC GGCCCTTATG GGTTCGATTC CGCCCGCGAT
ATTGAAGGCA TTACGGTGAA CCGGTGGGCG CATGGCTACG CCTATGGCTA CAACTCGCTC
TTCGATCCGG ATGTTCCTGA AGATCAGCGT CCACACATCA TTGGGCGCAA ACAGTTCGGC
CGGATTTCGA TTGCGAACTC TGATGCCGCG GCGACCGCTT ACACCGATGC CGCCATTGAC
ATGGCTGATC GCGCAGTCAA AGAAGTGCTC GCGTTGAAGA GTTAG
|
|---|
| Protein sequence | MNDKKRDCAL GMDRSITRRD FLNGVALTVG GALVAPNLLN ATEKGSSSEY YPPALMGLRG
NHEGTYTYAH ELRDGVFQES AQPLKTDEDY DLVIVGGGIS GLAAAHLYRK KAGKNAKILI
LDNHDDFGGH AKRNEFRAAN RMLLGYGGTQ SIESPSEYSP AAKQVLKDLG IETKRFYKDY
DQKLYSHLGT ANFFDKETFG QDKLVTAMFE TPWQEWVKQT PLSEAAKRDI ARVYTEKVDY
LPGLSPKEKR AKLAKISYAD YLTKYAKCTP EVLPFFQSRT NDLFCVNIDA VPTLAILEAG
DDYGIPYAGL DGLGFGNQSQ GRSEHKQEPY IFHFPDGNAS VARLLVRALM PGAIPGDSME
DVVTAKADYS TLDRADSPVR IRLNSTVVRA KHVGDVATSK QVEVQYMRDG KLQSVTGKAC
IMACYNMMVP YLCPELPQVQ KDALAEGVKA PLVYTHVAIR NWDIFDKLKM WQVCCPGSYH
VYVALDFPVS IGEYKFPSKP SEPMVLFMLR TPCKPGLSQK DQYRAGRMEL FTTPYETFER
NIREQLSRMF GPYGFDSARD IEGITVNRWA HGYAYGYNSL FDPDVPEDQR PHIIGRKQFG
RISIANSDAA ATAYTDAAID MADRAVKEVL ALKS
|
|---|
| |