| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1238 |
|---|
| Symbol | rplE |
|---|
| ID | 4072629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 1518410 |
|---|
| End bp | 1519072 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637983247 |
|---|
| Product | 50S ribosomal protein L5 |
|---|
| Protein accession | YP_590314 |
|---|
| Protein GI | 94968266 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0094] Ribosomal protein L5 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.467467 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000847503 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGACG AGAAGAAGCA GCAGAAGAAA CCGGACGGCG CGGGTAAGCG CCAGGCAAAG
GCCGAAGCGG CCGAGGCGCC CCAGAGCGGA CGTCCAAAGG CGAGCAACCG TGGCTCCGCG
CGCCTGCGTG GCAAGTTCAC GAAGGAAGTG GCGCCGGCAC TGATGAAAGA GTTCGGCATC
ACCAACGTGA TGGCGGTTCC GAAGATCGAG AAGGTCGTAG TGAACATGGG TGTGGGCGAA
GCAACGCAGA ACGCGAAAGT GCTCGACCCG GCCGTGAGCG ACCTGCAGGC CATCACTGGA
CAGAAGCCGG TGGTGACGAA GGCGAAGAAG TCGATCGCGC AGTTCAAGGT GCGTGAAGGC
CAGTCGATTG GCGCGATGGT TACGCTGCGC GGCGACCGCA TGTACGAATT CCTCGACCGC
CTGATGAACG TGGCGCTGCC CCGTGTGCGT GATTTCCGTG GCGTGCCGAT GAAGTCGTTT
GACGGGCGCG GCAATTTCAC GCTCGGCCTG CGCGACCAGT TGATCTTCCC GGAAATTGAC
TATTCGAAGG TCGACAAGTT GAAGGGCATG AACGTCACGA TTGTGACATC GGCAAAGAAC
GACGACCAGG CCCGCGCGCT GCTGAAGCAC ATGGGCATGC CGTTTCGGCA ACCGGGCGCT
TAG
|
|---|
| Protein sequence | MADEKKQQKK PDGAGKRQAK AEAAEAPQSG RPKASNRGSA RLRGKFTKEV APALMKEFGI
TNVMAVPKIE KVVVNMGVGE ATQNAKVLDP AVSDLQAITG QKPVVTKAKK SIAQFKVREG
QSIGAMVTLR GDRMYEFLDR LMNVALPRVR DFRGVPMKSF DGRGNFTLGL RDQLIFPEID
YSKVDKLKGM NVTIVTSAKN DDQARALLKH MGMPFRQPGA
|
|---|
| |