| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0912 |
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| Symbol | |
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| ID | 4069123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Koribacter versatilis Ellin345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008009 |
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| Strand | + |
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| Start bp | 1146681 |
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| End bp | 1148927 |
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| Gene Length | 2247 bp |
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| Protein Length | 748 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637982919 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_589989 |
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| Protein GI | 94967941 |
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| COG category | [R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.795031 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00626987 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACTTA CATTCGAAAT TCGCGAATGG CTGTTCACGG GAGTGCTCGC CGGCATAGCC
TTTGTTTCCG TTTCCTCGAT GTTTGCGCAG ACACCGCAGG CTGCCACGGT GCAAAAGGAC
GCTAGTTCCC CCGAGGCTCA CTTCGATTCC GCGCAGACTT TCCAGATTGC TAGTGACCTC
ACCCGCGCTG CGGCAGAGTA TCGCAAGGGG ATCTCGGTCG CACTCGAGCG CGTCGGGAAT
TTGAAAGTTG CAAAAGGTGA GTTCACCTCG GCTCTCGATT TGCTTCGGAA GGCAGTGGCC
ACCGACCCAG AAAACACGGA CGGCCAAATT GATCTCAGCA TCGCCTACTT CCGTGCCGGC
AATTACGAGG GCGCGAGGAC CGTGCTGCTA CCTCTTGTGA AGAGCGACCC GGGCAGTGCA
CGCGGTCGCA ACCTGATGGG CAAGATCCTT TTCATGCAAG GAGATTTTGA GGGTGCCTCA
ACCGAGTTGC AGGCAGCTCT TTCCATCACA CCTGACTTCG ATGTCGCCTA CAGTCTCGCA
CTCGCCTATC TTCAATTGAA GAAGTTGCCT CAAGTCACTC CGCTCGTCGA CGAGATGAAA
GCCTCTATGG CGAAGTCCCC GGAGCTTTAT ATGCTGCTCG GACAAGCCTA CCGGCAGACT
GGCTATTACG ACCAGGCGGT GAGCGAGTTC AAGACTGCGC TTGCGCTCGA TGCCGCGCGT
CCGCGCCTGC ATAACCTACT TGGAACGACT TATGTGGCGT TGGGGGGCAA GCAAAATTAC
GAACTCGCGC GCGCCGAATT CCAGCAGGAG CTTGCAAAGA ATCCGAAGGA CTATTCGAGC
CACTATTATC TTGGCCTGAT CGAGTTGGAA GACGGGCAGT ATGCGAAGGC CGAAGCCGCG
CTCAAAACCG CGCATGCCCT CGCGCCCGAC GACCCCGCGG CGATGCTCTT GCTCGGACGC
CTCTACGACC AGCAGAAGAA CTGGAATGCC GCGATCGAAG TGTTGCGTCA GGTGCTCGCG
CGTTCCTCAG CCCAAGGTGC ATCACCCGTG CAACTCGCGA CTACGCACGA AATGCTGTCG
AAGGCGTACG CAGGCGCGGG GCAGATTCCC GAAAGCGAAA AGGAACTCGC CGCCGCGAAT
GCGCTCAAAA GTCAAGACGC AAGCAAGAGC GCAACTAGTG ATCCGGCCGT GGCAATCCAA
CCGGAAAATA GTGGCAAAGA GCTTCGCGCA ATGCTGATGC AGGGATCGCC CAAGGCTCAG
CCATCTGACG CGTCTGAACA GAAGTACGTC GCCGATATCT CGAAACTCCT CGGAAATGCC
TATAACAATC TCGGGGTCAT CGACGCGCGT GCCGGCTCCT ACAAGCAGGC CGCCGACGAA
TTCAAAGAAG CTGCCAAATG GGACGATTCC ATTCCTCAAC TGGACCGTAA TAGGGGCCTT
GCTGCGTTCC GGGCCCAAGC ATACGCCGAT GCGATTCCGC CTCTTGAACG GCTGTTAAAA
AAATCTCCAT CTGACTCCAA TCTGCGCGAG TCTCTCGGTC TCAGCTACTA CATGACCGAC
AAATTCAAGG AGAGCGCGGC GACGCTTCGA CCGATTGTGG ACACAATGTC GAACAATCCC
GGCCTCCTGC TCTCCGCTGG CGTCGCGTTC GTAAAATCCG GAGATATCCC GACCGGTCAA
CGCTTGTTCA CTCGCGCCTT TGAGGTCGGC AAGGCGACGC CAGAAATTCA CTTGATTATC
GGTCAGGCAT ACGCGGAACA GTCCGATAAC GACGAAGCCC TCGCCGAATT CAAACAGGCT
CTTGAACTCA ACCCGAAGTT GCCGGACGCT CACTTCTACA TCGGAATGGT GCGATTTAAG
CGTGGTGAAT TCGACGACGC TGCCAAAGAA TTTCAGCAGG AGCTCGAGGT CAATCCTCAG
AGCGTTCAAG CGATGTACCA GTTGGCATAC ATCCGAATGC AGCAACACCA GGCGCCCGAA
GCCTCAAGTC TGCTTTCGGA AGTGATCAAG CAACAGCCGA ACAATTCAGA TGCCCACTAT
CAGCTCGGGA AAGCATTGTT GGAACAAGGT GATGCAGGCG GTGCAACGCG GGAACTTGAA
ACCTCGGTGA AGCTACATCC GACTGACTAT GCGTATTTCC AATTGAGTCA CGCGTACGCG
CGAACAGGTC GCGAGGCGGA TTCCAAGCAA GCGCTCGAGG AATTCGAAAA GCTGAAGCCT
AAACCGAAAA CACCGATGGG TCCCTGA
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| Protein sequence | MKLTFEIREW LFTGVLAGIA FVSVSSMFAQ TPQAATVQKD ASSPEAHFDS AQTFQIASDL
TRAAAEYRKG ISVALERVGN LKVAKGEFTS ALDLLRKAVA TDPENTDGQI DLSIAYFRAG
NYEGARTVLL PLVKSDPGSA RGRNLMGKIL FMQGDFEGAS TELQAALSIT PDFDVAYSLA
LAYLQLKKLP QVTPLVDEMK ASMAKSPELY MLLGQAYRQT GYYDQAVSEF KTALALDAAR
PRLHNLLGTT YVALGGKQNY ELARAEFQQE LAKNPKDYSS HYYLGLIELE DGQYAKAEAA
LKTAHALAPD DPAAMLLLGR LYDQQKNWNA AIEVLRQVLA RSSAQGASPV QLATTHEMLS
KAYAGAGQIP ESEKELAAAN ALKSQDASKS ATSDPAVAIQ PENSGKELRA MLMQGSPKAQ
PSDASEQKYV ADISKLLGNA YNNLGVIDAR AGSYKQAADE FKEAAKWDDS IPQLDRNRGL
AAFRAQAYAD AIPPLERLLK KSPSDSNLRE SLGLSYYMTD KFKESAATLR PIVDTMSNNP
GLLLSAGVAF VKSGDIPTGQ RLFTRAFEVG KATPEIHLII GQAYAEQSDN DEALAEFKQA
LELNPKLPDA HFYIGMVRFK RGEFDDAAKE FQQELEVNPQ SVQAMYQLAY IRMQQHQAPE
ASSLLSEVIK QQPNNSDAHY QLGKALLEQG DAGGATRELE TSVKLHPTDY AYFQLSHAYA
RTGREADSKQ ALEEFEKLKP KPKTPMGP
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