| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0308 |
|---|
| Symbol | |
|---|
| ID | 4068585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 330534 |
|---|
| End bp | 331799 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637982311 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_589387 |
|---|
| Protein GI | 94967339 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.742688 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACCC TGTTGCTGTT CGCGACTACG TCGCTATTTT TGCTGGCCGG CTGCAGCAAG
CAAGAGAAGG CGCCTACCCC CGAAGTTGAA GTACAGGCCG AGGCTGTCGC AGCCCATGAG
ATCACCTTGC ACGTTCAGGG CGACGCCGTA CTATTCGCGT TACAGCAGGC CGCGATCACT
CCGAAGGTAA GTGCACCAGT GCGGAAGTTC TTCGTACAGC GTGGTGCGAG AGTGCATCGT
GGACAACTGC TGGCCCGCCT GGAATCGCGC GATGTAAGCG CCGCGGCGGA GGATGCGCGT
GGAGGCTTTC AACAGGCGGA GTCGTCGTAC AAGACAGCTA CCCAAGCCGC GGTGCCTGAG
GAATACCAAA AGGCTGAACT CGACTACGAA CAGGCCAAAA CAAACCTCGA CGTTCAGCAG
AAGATATTCG ATGCACGACA GAAGCTCTTC CAGGAAGGGG CGATTCCCGG CCGCGACCTC
GATACAGCGC GCCTGAACCT CGTCCAGGCG CAGAGCCAAT TCAACGAGGC CTCCAAGCAC
CTGGAATCTG CTAAGGCAGT TACTCGTGAA CAGTCAATGC GGAACGCCGA AGGCCAACTA
CAGTCAGCGC GCGGAAAGCT GCAAGTGGCC GAAGCCTCAG TCAGCTACAC CGAGATTCGC
AGTCCGATTG ATGGCGTGGT CACGGATCGT CCTTTCTTCG ACGGTGAAAT GACGACACCC
GGGACGCCGC TGATCACGGT GATGGAAACT TCGTCGCTGC TTGCCAAAGC GCATCTACCT
CAGGCGGAAG CGCAACAGCT GAAACCTGGT GATGACGCGA CGGTGACGGT GCAGGGACTT
GAAAAACCAG TTCCAGGAAA AGTGACGATG GTTAGCCCCG CGCTCGATCC TGGAAGCACA
ACTGTGGAAG TTTGGGTGAA GGTCGAGAAC AAAGAGGGTG CACTGAAGCC GGGAACGGCG
GCTCGCGTCG CGATTGCGGC GCGAACCTTG AAGGACGCTC TGACCATTCC GAGTTCGGCC
GTTCTAAAGG ACGACTCAGG CAAAGCGTTC GTAATGGTGG TTGAGAATGC GATGGCTCGC
AAACGCGATG TCCAGATCGG TATAACCGAT GGCGACGACG TTCAGATCGT CGAAGGGTTG
AAAGCGGGCG AGCAGGTCAT TACCACGGGT TCATTCGGTC TCGACGATAA GACTAAAGTC
AAAGTCGTCG CGGCCGAGAA GGCATCCGAT AGCGCAGATG ATAAGAAGTC AGAGGGCAAA
GATTAA
|
|---|
| Protein sequence | MKTLLLFATT SLFLLAGCSK QEKAPTPEVE VQAEAVAAHE ITLHVQGDAV LFALQQAAIT
PKVSAPVRKF FVQRGARVHR GQLLARLESR DVSAAAEDAR GGFQQAESSY KTATQAAVPE
EYQKAELDYE QAKTNLDVQQ KIFDARQKLF QEGAIPGRDL DTARLNLVQA QSQFNEASKH
LESAKAVTRE QSMRNAEGQL QSARGKLQVA EASVSYTEIR SPIDGVVTDR PFFDGEMTTP
GTPLITVMET SSLLAKAHLP QAEAQQLKPG DDATVTVQGL EKPVPGKVTM VSPALDPGST
TVEVWVKVEN KEGALKPGTA ARVAIAARTL KDALTIPSSA VLKDDSGKAF VMVVENAMAR
KRDVQIGITD GDDVQIVEGL KAGEQVITTG SFGLDDKTKV KVVAAEKASD SADDKKSEGK
D
|
|---|
| |