| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0030 |
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| Symbol | |
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| ID | 4071735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Koribacter versatilis Ellin345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008009 |
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| Strand | + |
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| Start bp | 27676 |
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| End bp | 28788 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637982030 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_589109 |
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| Protein GI | 94967061 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.405013 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGAAAAG GCTTCGACAA CCCGATTCAG CACCAGGCGC CCGAAGGTGC CTGTGTCGCC
GTGCGCTTCC AGATTGGCAG CGTCGAGATC CGTCCCGCGA CCGTGCTGGC GCCGATGGCA
GGGGTGACGG ACACGGTTTT CCGGCGGTTC ATCCGCAACC TGGGCGGCTG CGGACTGATG
ATGACGGAGT TCACCTCGGC TGACGGCTTG GCGCGGATGC GCGAGGCAAA GGCCCGGCGC
TATCTCACGT TCTACGGCAA CGAGCGCCCG ATTTCGGCAC AGTTGTTCGG CAGCGATGCC
GAAACGCTCG CCGACGCGGC AAAGGTCGTG CAGGACCTCG GCTTCGACCT GGTCGACCTG
AATTTAGGAT GTCCGTCGAA GCGCGTGGTG AAGTGCAATG GCGGCTCCGG ACTGTTGCGC
GACTTGCCGC AGATCAAAGT TATCTTCGAA TCCGTACGCA AGGCGGTGAC GATTCCGTTC
ACGGTGAAGT TCCGCGCCGG CTGGAACGAG AAGGAACTCG TTTTCCTTGA GCTGGCGAAA
TTGGCGGAGA ATTGCGGGCT GAATGCTGTC GCGATGCATG CGCGAACGCG CGAGCAGGGC
TACAGCGGCC AGGCGAACTG GGGATGGATT GCCGACCTGA AGCAGGTGGT GAAAATTCCT
GTCATCGGGA ATGGCGATAT CCGTACACCC GAAGATGCGG CGGCGATGGT GGCGAAGACC
GGCTGTGATG CCGTGATGAT CGGCCGCTCC GCGGCGTCGA ATCCATGGAT CTTCCGTCAG
ATCGAGCAGT ACACCGCCAC CGGACGCTAC GATCTGCCGA CCAACGAAGA TCGCTACGAG
ATGATCCGCA TGTACTTCCG CATGCTGATC GAGAACGACA CCCAAGGCGC GGAAGGCAAG
ATGAAGCAGT TCGCCTCGTG GTTCACGCAT GGCGTGCCGG GAGGAGGCGT TCTGCGCAAA
GCCGTGTACG AAGCGAAGAA GCGCGAGACG ATTCTGGTGG CGGTGGATCA GTTCTTCGAA
GCGTTGCTCG CCGGCAAAAT TGCAGCTGCG AGCGAGACGG GGCCGTCACC GAATGATGAG
CTGGAGTCAA ATCCGGCGGC AATGACGGGC TAG
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| Protein sequence | MRKGFDNPIQ HQAPEGACVA VRFQIGSVEI RPATVLAPMA GVTDTVFRRF IRNLGGCGLM
MTEFTSADGL ARMREAKARR YLTFYGNERP ISAQLFGSDA ETLADAAKVV QDLGFDLVDL
NLGCPSKRVV KCNGGSGLLR DLPQIKVIFE SVRKAVTIPF TVKFRAGWNE KELVFLELAK
LAENCGLNAV AMHARTREQG YSGQANWGWI ADLKQVVKIP VIGNGDIRTP EDAAAMVAKT
GCDAVMIGRS AASNPWIFRQ IEQYTATGRY DLPTNEDRYE MIRMYFRMLI ENDTQGAEGK
MKQFASWFTH GVPGGGVLRK AVYEAKKRET ILVAVDQFFE ALLAGKIAAA SETGPSPNDE
LESNPAAMTG
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