Gene BCI_0616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBCI_0616 
SymbolrpoD 
ID4056502 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBaumannia cicadellinicola str. Hc (Homalodisca coagulata) 
KingdomBacteria 
Replicon accessionNC_007984 
Strand
Start bp646370 
End bp648208 
Gene Length1839 bp 
Protein Length612 aa 
Translation table11 
GC content36% 
IMG OID637981965 
ProductRNA polymerase, sigma 70 factor 
Protein accessionYP_589041 
Protein GI94676896 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.840508 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACAAA ATCAGCATTT ACAGCTAAAG TTGCTTGTTA CACGTGGTAA AGAACAAGGC 
TATTTGACTG TTGCTGAAGT CAATGATCTT CTTCCAGAAG ATATTGTTGA TTCTGATCAG
ATAGAAGATA TCATCCAAAT GATTAATGAT ATGGGCATCC AAGTTATGGA AGAAGCGCCA
GATGCTGATG ATATTCTATT AGATGAAACA AATTCAGATA CAGATGAAGA TGCTGTAGAA
GCAGCTGCTC AGGTCTTATC TAGTGTTGAA TCCGAGATAG TTCGTACTAC TGATCCTGTC
CGTATGTATA TGCGTGAAAT GGGTACTGTA GAATTGCTTA CCCGTGAAGG TGAAATTAAC
ATTGCTAAGC GTATAGAAGA TGGTATGACT CAGGTACAGT GTTCGGTTGC CGAGTATCCT
GAGGCTATAA CTTATTTGCT TAAACAATAT GACCGCGTTG AGTTAGGTGA AGCACGTTTA
TCAGATCTTA TCATAAATTT CGTTGATACT CATATGGAAG TACCGGACAT AATATCAACT
ACGAGTAATA TCAGTACAGA ACTTGCTTCT GATATAAGTG ATGATGAAGA TGAAGAAGTA
AATGATGAAA ATACTAACGA AGATAGTAGC ATAGATCCTG AAATAGCACA CCAGAAATTT
GTTGAATTAC GTGAACAATA TGAAATTACC CGTAATATTA TTGATACTAA AGGTCGCAGT
CATGCTAAAG CAATAGAAGA AATACTTAAG CTTTCTGAGA TATTTAAACA ATTTCATTTA
GCACCAAAAC AGTTTGACTA TCTAGTAAAG AATATGCGTG CTGTGATGGA TCGTATACGT
CTTCAAGAAC GTTTAGTAAT GAAACTATGC GTAGATATCA GTAAAATGCC AAAGAAAGAC
TTTATTAAGC TATTTGCTGG TAATGAAACT AGTGAAACGT GGTTTAAAAC AGCACTAGCA
ATGAATCAAC CCTGGTCTGA AAAATTATAT AATGTAGATA AAAATGTACA TAATAGTCTA
CAAAAGTTAC GTCAAATAGA AGAAGAGACT GGTTTAAGTA TCGAACAAAT AAAAGATATT
AACCGTCGTA TGTCAATTGG TGAAGCAAAA GCTCGTCGTG CTAAAAAAGA GATGGTCGAA
GCAAACCTAA GATTAGTTAT TTCTATTGCT AAGAAATATA CTAACCGTGG TCTACAATTT
CTTGATTTAA TTCAAGAAGG TAATATTGGT CTCATGAAAG CAGTAGATAA ATTTGAATAC
CGCCGTGGCT ATAAATTCTC TACTTATGCT ACCTGGTGGA TCCGTCAAGC TATCACTCGT
TCTATAGCTG ATCAAGCCCG GACTATCCGT ATTCCAGTAC ATATGATCGA AACTATTAAC
AAGCTTAATC GTATTTCCCG GCAAATGCTA CAGGAAATTG GACGCGAACC AACACCAGAA
GAACTAGCAG AACGTATGTT TATGCCAGAA GATAAAATTC GCAAAGTACT AAAAATAGCT
AAAGAACCTC TTTCTATGGA AACACCTATT GGTGACGATG AAGATACACA TTTAGGTGAT
TTTATTGAGG ATACTACCTT AGAGCTTCCT CTAGAATCAG CTACTTCTGA AAGCTTACGT
TCTGCTACTC ATGAGATACT AGCAGGTCTA ACCGCTCGTG AAGCAAAAGT ACTACGTATG
CGCTTTGGTA TTGATATGAA TACTGATCAT ACATTAGAAG AAGTAGGTAA ACAATTTGCT
GTTACCCGTG AGCGTATTCG GCAAATTGAA GCAAAGGCAT TACGCAAATT ACGTCATCCT
AGCCGCTCTG AAGTTTTGCG GAGCTTTTTA GATGATTAA
 
Protein sequence
MEQNQHLQLK LLVTRGKEQG YLTVAEVNDL LPEDIVDSDQ IEDIIQMIND MGIQVMEEAP 
DADDILLDET NSDTDEDAVE AAAQVLSSVE SEIVRTTDPV RMYMREMGTV ELLTREGEIN
IAKRIEDGMT QVQCSVAEYP EAITYLLKQY DRVELGEARL SDLIINFVDT HMEVPDIIST
TSNISTELAS DISDDEDEEV NDENTNEDSS IDPEIAHQKF VELREQYEIT RNIIDTKGRS
HAKAIEEILK LSEIFKQFHL APKQFDYLVK NMRAVMDRIR LQERLVMKLC VDISKMPKKD
FIKLFAGNET SETWFKTALA MNQPWSEKLY NVDKNVHNSL QKLRQIEEET GLSIEQIKDI
NRRMSIGEAK ARRAKKEMVE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG LMKAVDKFEY
RRGYKFSTYA TWWIRQAITR SIADQARTIR IPVHMIETIN KLNRISRQML QEIGREPTPE
ELAERMFMPE DKIRKVLKIA KEPLSMETPI GDDEDTHLGD FIEDTTLELP LESATSESLR
SATHEILAGL TAREAKVLRM RFGIDMNTDH TLEEVGKQFA VTRERIRQIE AKALRKLRHP
SRSEVLRSFL DD