Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BCI_0616 |
Symbol | rpoD |
ID | 4056502 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Baumannia cicadellinicola str. Hc (Homalodisca coagulata) |
Kingdom | Bacteria |
Replicon accession | NC_007984 |
Strand | - |
Start bp | 646370 |
End bp | 648208 |
Gene Length | 1839 bp |
Protein Length | 612 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 637981965 |
Product | RNA polymerase, sigma 70 factor |
Protein accession | YP_589041 |
Protein GI | 94676896 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.840508 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAACAAA ATCAGCATTT ACAGCTAAAG TTGCTTGTTA CACGTGGTAA AGAACAAGGC TATTTGACTG TTGCTGAAGT CAATGATCTT CTTCCAGAAG ATATTGTTGA TTCTGATCAG ATAGAAGATA TCATCCAAAT GATTAATGAT ATGGGCATCC AAGTTATGGA AGAAGCGCCA GATGCTGATG ATATTCTATT AGATGAAACA AATTCAGATA CAGATGAAGA TGCTGTAGAA GCAGCTGCTC AGGTCTTATC TAGTGTTGAA TCCGAGATAG TTCGTACTAC TGATCCTGTC CGTATGTATA TGCGTGAAAT GGGTACTGTA GAATTGCTTA CCCGTGAAGG TGAAATTAAC ATTGCTAAGC GTATAGAAGA TGGTATGACT CAGGTACAGT GTTCGGTTGC CGAGTATCCT GAGGCTATAA CTTATTTGCT TAAACAATAT GACCGCGTTG AGTTAGGTGA AGCACGTTTA TCAGATCTTA TCATAAATTT CGTTGATACT CATATGGAAG TACCGGACAT AATATCAACT ACGAGTAATA TCAGTACAGA ACTTGCTTCT GATATAAGTG ATGATGAAGA TGAAGAAGTA AATGATGAAA ATACTAACGA AGATAGTAGC ATAGATCCTG AAATAGCACA CCAGAAATTT GTTGAATTAC GTGAACAATA TGAAATTACC CGTAATATTA TTGATACTAA AGGTCGCAGT CATGCTAAAG CAATAGAAGA AATACTTAAG CTTTCTGAGA TATTTAAACA ATTTCATTTA GCACCAAAAC AGTTTGACTA TCTAGTAAAG AATATGCGTG CTGTGATGGA TCGTATACGT CTTCAAGAAC GTTTAGTAAT GAAACTATGC GTAGATATCA GTAAAATGCC AAAGAAAGAC TTTATTAAGC TATTTGCTGG TAATGAAACT AGTGAAACGT GGTTTAAAAC AGCACTAGCA ATGAATCAAC CCTGGTCTGA AAAATTATAT AATGTAGATA AAAATGTACA TAATAGTCTA CAAAAGTTAC GTCAAATAGA AGAAGAGACT GGTTTAAGTA TCGAACAAAT AAAAGATATT AACCGTCGTA TGTCAATTGG TGAAGCAAAA GCTCGTCGTG CTAAAAAAGA GATGGTCGAA GCAAACCTAA GATTAGTTAT TTCTATTGCT AAGAAATATA CTAACCGTGG TCTACAATTT CTTGATTTAA TTCAAGAAGG TAATATTGGT CTCATGAAAG CAGTAGATAA ATTTGAATAC CGCCGTGGCT ATAAATTCTC TACTTATGCT ACCTGGTGGA TCCGTCAAGC TATCACTCGT TCTATAGCTG ATCAAGCCCG GACTATCCGT ATTCCAGTAC ATATGATCGA AACTATTAAC AAGCTTAATC GTATTTCCCG GCAAATGCTA CAGGAAATTG GACGCGAACC AACACCAGAA GAACTAGCAG AACGTATGTT TATGCCAGAA GATAAAATTC GCAAAGTACT AAAAATAGCT AAAGAACCTC TTTCTATGGA AACACCTATT GGTGACGATG AAGATACACA TTTAGGTGAT TTTATTGAGG ATACTACCTT AGAGCTTCCT CTAGAATCAG CTACTTCTGA AAGCTTACGT TCTGCTACTC ATGAGATACT AGCAGGTCTA ACCGCTCGTG AAGCAAAAGT ACTACGTATG CGCTTTGGTA TTGATATGAA TACTGATCAT ACATTAGAAG AAGTAGGTAA ACAATTTGCT GTTACCCGTG AGCGTATTCG GCAAATTGAA GCAAAGGCAT TACGCAAATT ACGTCATCCT AGCCGCTCTG AAGTTTTGCG GAGCTTTTTA GATGATTAA
|
Protein sequence | MEQNQHLQLK LLVTRGKEQG YLTVAEVNDL LPEDIVDSDQ IEDIIQMIND MGIQVMEEAP DADDILLDET NSDTDEDAVE AAAQVLSSVE SEIVRTTDPV RMYMREMGTV ELLTREGEIN IAKRIEDGMT QVQCSVAEYP EAITYLLKQY DRVELGEARL SDLIINFVDT HMEVPDIIST TSNISTELAS DISDDEDEEV NDENTNEDSS IDPEIAHQKF VELREQYEIT RNIIDTKGRS HAKAIEEILK LSEIFKQFHL APKQFDYLVK NMRAVMDRIR LQERLVMKLC VDISKMPKKD FIKLFAGNET SETWFKTALA MNQPWSEKLY NVDKNVHNSL QKLRQIEEET GLSIEQIKDI NRRMSIGEAK ARRAKKEMVE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG LMKAVDKFEY RRGYKFSTYA TWWIRQAITR SIADQARTIR IPVHMIETIN KLNRISRQML QEIGREPTPE ELAERMFMPE DKIRKVLKIA KEPLSMETPI GDDEDTHLGD FIEDTTLELP LESATSESLR SATHEILAGL TAREAKVLRM RFGIDMNTDH TLEEVGKQFA VTRERIRQIE AKALRKLRHP SRSEVLRSFL DD
|
| |