| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5644 |
|---|
| Symbol | carX |
|---|
| ID | 4042508 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 2404916 |
|---|
| End bp | 2406352 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637981063 |
|---|
| Product | carotenoid oxygenase |
|---|
| Protein accession | YP_587772 |
|---|
| Protein GI | 94314563 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3670] Lignostilbene-alpha,beta-dioxygenase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.427984 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGACA GCTTGTCCGA AGTGGAAGGT GCAGCGGGTG ACGTGAGCGA CGTGAGTGAG
GTGGATAACT TCGCGCCGGT CACGCAGGAA GTCGATGCAA GCGATCTCTG CGTGCGTGGC
GTGTTGCCAG CGGGGTTGCA GGGCACGTTG TATCGCATCG GCCCGAACCC GCGCTTTCCG
CAGCCCGAGG CGCACTGGTT CGGTGGCGAC GGCATGGTGC ATGTGTTCGC CATCGACGAT
GGGCGCGTGT CCTACCGCAA CCGCTGGGTG CGCACGCCCA AGTGGCGTGA CGAGGATCGT
GCCGGGCGTC CACTATTCCG CGCCTTCGCC GGCAAGTTGC CCGATGCGCC GGAGTGGTCG
GGCAGCGATG GCGGCGTGGC CAATACCAAC ATCATCTGGC ACGGCGGCGC GCTGCTGGCG
CTCGAGGAAG CGCACCTGCC CACTGCTGTG ACGCCGCGCG CGATCGACAC CCTTGGATAT
ATGGAATACG GCCCGCTGAA GGGGCCGTTC ACCGCGCATC CGAAGACCGA CCCGCGCACT
GGCGAACTAC TGTTCTTCGG CTACAACGCC GACGGCAAGC TCACGCCGGG CGTGCAGGTT
GGTGCGATCG ATGCACAGGG CCGCCTGACG CATTACGCGC GTCTGCAGGC GCCGTACCCG
AGCATGATCC ACGACTTCAT GGCCACGCCG GGTCATCTGT TGATCCCCGT GCTGCCGCTG
ACCGGTAGCC TTGCGCGCGT GGAGCGCGGC GGCCCTGGCT ATGCATGGGA GCCAGAGAAG
CCCGCCATGA TCGGCGTCCT GCCGCGTGGT GGCGGCGCTG ACGACGTGCG GTGGTTCGAG
GGCCCTGCCT GCTATGTGTT CCACGTGATG AACGCGTGGG AGGAAGGCGA GGGGGGACAA
CGCATTCTGG CGGACGTCAT GGTCTACGAC GAACCTCCCC TGTTCCCCCA CGCCGACGGA
TCGCCAGGAG ATCCCGCCCG GCAGCAGGCG TACCTGACGC GCTGGACGTT CGATCTTGCG
TCGGACATAC GCCGGTTCAC CGCCGAACGG CTCGACGATA CGGCGGGCGA GTTTCCGCGC
ATCGACGACC GCGTTTCGGG TTTCCGCTAT CGGCACGGAT GGTTCGCCGC GTCGCATCCC
GAGTACGGCG AAGGCGCGCT CAACGGCATC ATGCACCTGG ACATGCAGGA CGGCACGCGC
GACGCCTACT GGCTGCCGCG GGGCGATATC ACGTCCGAGC CGGTGTTCGC GCCGGGTGGT
GGCGCTCATG GCGGCGAGGG CGATGGCTGG CTGTTGGCGG TGGTGTGGCG GGCTGCGGCA
CAATGTAGCG AATTGCTGGT GTTCGATGCG CGGCACGTCG CGCGCGGTCC GCTGGCAACC
GTCGAGCTGC CGCAGCGCGT GCCGTTCGGC TTCCATGGCA ACTGGGTAGC GGGATAG
|
|---|
| Protein sequence | MEDSLSEVEG AAGDVSDVSE VDNFAPVTQE VDASDLCVRG VLPAGLQGTL YRIGPNPRFP
QPEAHWFGGD GMVHVFAIDD GRVSYRNRWV RTPKWRDEDR AGRPLFRAFA GKLPDAPEWS
GSDGGVANTN IIWHGGALLA LEEAHLPTAV TPRAIDTLGY MEYGPLKGPF TAHPKTDPRT
GELLFFGYNA DGKLTPGVQV GAIDAQGRLT HYARLQAPYP SMIHDFMATP GHLLIPVLPL
TGSLARVERG GPGYAWEPEK PAMIGVLPRG GGADDVRWFE GPACYVFHVM NAWEEGEGGQ
RILADVMVYD EPPLFPHADG SPGDPARQQA YLTRWTFDLA SDIRRFTAER LDDTAGEFPR
IDDRVSGFRY RHGWFAASHP EYGEGALNGI MHLDMQDGTR DAYWLPRGDI TSEPVFAPGG
GAHGGEGDGW LLAVVWRAAA QCSELLVFDA RHVARGPLAT VELPQRVPFG FHGNWVAG
|
|---|
| |