| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5637 |
|---|
| Symbol | apbE |
|---|
| ID | 4042501 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 2397261 |
|---|
| End bp | 2398274 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637981056 |
|---|
| Product | ApbE-like lipoprotein, membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| Protein accession | YP_587765 |
|---|
| Protein GI | 94314556 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.85012 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGCG TTCTTATCCC CGCCACGCTG GACCTGCCCC CGCCCGTTCG CGAGCCGCAA
GGCTCGATCG CGCAATGGAC GGGCGAGACG ATGGGGACGA CCTGGGCTGT CCGCGCCGTG
CTGGCGCGCG GGCAGGACGG CGGCGGCCTG GAGGCAGGCA TCCGCGCGGT GCTCGACGAG
GTTATCGCGC AGATGAGCAA CTGGTCCGAG ATATCGGACC TGAGCCGTTT CAATCGGGCC
GACGCCAGTG CTTGGGTCAC GCTGCCCGAG GATTGCTTCA CGGTCCTGCA GGCGGCGCTG
GACACCGCGC GCGACAGCGG TGGCGCCTAC GATCCCAGTG CCGGCCCGCT CGTCGATCTC
TGGGGCTTCG GCCCGGCTGG CAAACGGCAC ACCGCGCCTA CCGCCGATGA CGTGGCACGG
GCGCGCCAGC ATTGCGGCTG GCAACGGATC GAGATCGACC CATCGGCGCG TCGCGCGCGC
CAGCCGGGCG GACTGTCACT CGATTTCTGC GCGATCGCGA AGGGGTTTGC CGTCGATGCG
GTATCGCGCT ATCTCCTGGC CCAGGGCGTG CCGCATCATC TGGTCGAGAT CGGCGGCGAG
TTGCGCGGCC AGGGGCTGAA GCCCGATGGG ATGCCGTGGT GGATCGAACT GGAGTCCCCC
TCGGCATCTG CCACTGCTGC GGGCGGGATC AGACGTACGC TGGTGGCGTT GCTCGGCCTG
TCGATCGCCA CGTCGGGCGA CTACCGCCGC TACTTCGAAC ACGATGGGCG GCGGTACGCG
CATACGATTG ATCCACGCAC CGGCTACCCG GCCGCGCATG CGTTGGCGTC CGTCACGGTG
CTCCATCGCG AATGCATGAT GGCCGACGCG TTGTCCACCG CACTGACCGT GCTCGGGCCA
GAAGCCGGCA TCACCTTCGC CACGCGCCAG GGCCTGGCTG CCCGCTTCCT GGTGCGCACG
CCGCACGGCT TCGATGAGCG GGTCACCCCG GCGTTCGCCG CGATGCAAAC ATGA
|
|---|
| Protein sequence | MNRVLIPATL DLPPPVREPQ GSIAQWTGET MGTTWAVRAV LARGQDGGGL EAGIRAVLDE
VIAQMSNWSE ISDLSRFNRA DASAWVTLPE DCFTVLQAAL DTARDSGGAY DPSAGPLVDL
WGFGPAGKRH TAPTADDVAR ARQHCGWQRI EIDPSARRAR QPGGLSLDFC AIAKGFAVDA
VSRYLLAQGV PHHLVEIGGE LRGQGLKPDG MPWWIELESP SASATAAGGI RRTLVALLGL
SIATSGDYRR YFEHDGRRYA HTIDPRTGYP AAHALASVTV LHRECMMADA LSTALTVLGP
EAGITFATRQ GLAARFLVRT PHGFDERVTP AFAAMQT
|
|---|
| |