| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5373 |
|---|
| Symbol | |
|---|
| ID | 4042234 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 2098197 |
|---|
| End bp | 2100182 |
|---|
| Gene Length | 1986 bp |
|---|
| Protein Length | 661 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637980791 |
|---|
| Product | TonB-dependent outer-membrane transporter |
|---|
| Protein accession | YP_587501 |
|---|
| Protein GI | 94314292 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0456572 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTGA AATGCCTCGC CGTCGTCGCC GGCACCCTGC TCTCCTCCAC ACCCCACCTC
CGGGCGCAAA CGGTTGGAAC GGCGGACCCA CTACCTACAG TCGTCGTGAC AGGCACCCGT
TCCGAGAAAA CACTCGATGA AACGCCGATC CGCACGGAGG TCGTCGACCG TCAGGAGATC
GAACGCACGC ACGCCCGCAC GCTGAAGGAC GCCCTGGAGA ACGTGCCCGG CCTGCAGTTG
CGCGAGATCC ACGGCAAGTC CGGCTATGAG GTGACCCTGC AAGGGATGAC CAGCGACCAG
GTGCTTATCC TGGTCGACGG CCTGCCGATC ACGGCCAGCA CCGGGTCGAC CGTTGACGTT
TCCCAGTACC TGCTGGCCGA AGTCGACCAC GTCGAGGTGG TCAAGGGCGC CAGTTCCGCG
CAGTACGGCA GCTCGGCGAT GGGCGGGGTG ATCAATGTCA TCACGCGGCC CATCTCGCGC
GGATTCTCGG CTGCCGCGAC AGCCGATGCA GGCACCTATG GCAGCCAGAA CGCCGACGGC
TCGCCCGGTT CCCTGCATGG CAACATCCGG CTCGAAGGCG GCAACGAACA GTTCCGCGCA
CGCGTCACCG CCGACGCGCT CGACAACAAG GGCTATGCCG TGGAACCCGA CGGCTGGACA
CGGCACGGCG ACAAGATTCG CCGCGAGCAG TATGCCGGTC GCCTCGAATG GTTGCCCAGC
GCCGCCGGCA GCTTCTGGTT CGACGCCAGC GCCTATCGCG AGACCGACGA ACAACGCTAC
CAGTACTACG CGCCGCCCAA CTACGTCCCG CAGCGCAAGA CAGAGGACAT CGATCGCAAC
CGCTACACAT ATGGCGGCCA ATGGCGCTTC GGCAATGGCG TGCGCGCCCG CCTGGCCGGG
GTGCACGAGA CCTACGACAG CACCTCGCGC GAGTACTCGA ACGGCTTCCA GACCGCGACG
CGCAATGCCG CGCAGCAGAC CGACCATGTC TCCGCGCAGT TCGACATGCC AGCCTGGTAT
CGACAGCTCT GGCAGTTCGG CGGCGACTTC CACCGCGAAA CGCTCGACCA GAACGTCAAC
GGCACGTCCG AACTGGCCGG CAAGGGCAGC GCCGAACGGC AGGCCGGCGA GCTCTACCTG
CAGAACGACA TCCTCTTCAA CGAGACGTGG GAAATGGTCG TCGGCCTGCG CGGCCAGCAT
GACTCTGACT TCGGCGCGCA CTTCGCGCCC AAGGTGGGCG TGCGCGCGAA CCTGCTGTCG
AACGACACCT GGAAGGGCGT GCTGCGCGCC AACTACGGCC AGGGCTACCG CGTGCCGAAC
CTGAAGGAAC GGCACTACCT GTTCGATCAC AGCTCGCTTG GCTACATCGT CCTCGGCAAC
CCGAACCTCA AACCAGAATC GTCGAACAGC TTCCAGCTCG GCGGGCAGCT CACGTGGCGA
GACCGCGTCA CGCTCGATGC CAACCTGTTC TACAACCACG TGGCGGATCT GATCCAGACC
GACATGACCA ACTTCACGAT GGTCAACGGC ATCGCGGTCT ACACCTACCG CAACGTGGCA
CGCGCCCGCA CCCAGGGCGC TGAGACAGCG CTGCGCTGGC GCGCGACCAA CCAGTTGAAT
CTGACAGCCG CCTACACCTA CACGTCGACC GAGGATCTGA ACACAGGTAG CGAACTGACC
CGCCGGCCGC GCCATATGGG CCGCGTCGGC GCGGACTGGC GCGTGCTGCC CGCCACCGAG
CTATCCGCGC GGGCGCGCTT CCAGAGCAGC GAGCTGACCG ACTCGGCCAC CGGCGCGCGC
TCGCCCGGCT GGGGCACGCT GGATCTGGTG CTGAACCAGA AGCTCGACCG CAACGTGACC
GCTTTCGTCG GCGTGAACAA CCTGTTCAAC CGCCAACGCG ATTTCGCAAA TGCCAGTGAC
TTCGGGCCGG TGGCGGGCCG CTTCATCTAT CTGGGCGCAC GCTTCAACGT GGACGTCGCC
CGCTAA
|
|---|
| Protein sequence | MRLKCLAVVA GTLLSSTPHL RAQTVGTADP LPTVVVTGTR SEKTLDETPI RTEVVDRQEI
ERTHARTLKD ALENVPGLQL REIHGKSGYE VTLQGMTSDQ VLILVDGLPI TASTGSTVDV
SQYLLAEVDH VEVVKGASSA QYGSSAMGGV INVITRPISR GFSAAATADA GTYGSQNADG
SPGSLHGNIR LEGGNEQFRA RVTADALDNK GYAVEPDGWT RHGDKIRREQ YAGRLEWLPS
AAGSFWFDAS AYRETDEQRY QYYAPPNYVP QRKTEDIDRN RYTYGGQWRF GNGVRARLAG
VHETYDSTSR EYSNGFQTAT RNAAQQTDHV SAQFDMPAWY RQLWQFGGDF HRETLDQNVN
GTSELAGKGS AERQAGELYL QNDILFNETW EMVVGLRGQH DSDFGAHFAP KVGVRANLLS
NDTWKGVLRA NYGQGYRVPN LKERHYLFDH SSLGYIVLGN PNLKPESSNS FQLGGQLTWR
DRVTLDANLF YNHVADLIQT DMTNFTMVNG IAVYTYRNVA RARTQGAETA LRWRATNQLN
LTAAYTYTST EDLNTGSELT RRPRHMGRVG ADWRVLPATE LSARARFQSS ELTDSATGAR
SPGWGTLDLV LNQKLDRNVT AFVGVNNLFN RQRDFANASD FGPVAGRFIY LGARFNVDVA
R
|
|---|
| |