Gene Rmet_5340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_5340 
SymbolhlyB 
ID4042201 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp2050600 
End bp2052366 
Gene Length1767 bp 
Protein Length588 aa 
Translation table11 
GC content64% 
IMG OID637980758 
Producthemolysin activator translocator 
Protein accessionYP_587468 
Protein GI94314259 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2831] Hemolysin activation/secretion protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAATCA AGTCGATGGC GATGACTCGC CCACTTCATG CGAGCCTGCT GCTGCTCGGC 
CTGTCCACGT GCGCGGAGGC GCAGCCGACT GGCCCGGGCC GGAGCCCGGC CACCACCGCC
GCCGATCAAC AACAACTCAC CCGCCAGCAA CAGGAAGCCC GCGAGCGCGC CCAGGCCATC
GAGGCTCCCG GCGTGCGCGC GCAGGAGATC ACGCCGCTCG TCTATCCGAC GCTGCCGACC
GAGACGCCAT GTTTCCGCAT CGACCGCTTC GTGCTCGAAG TCCCGGCCGA TCTGCCCGAT
AGCGTCCAGG TACACGGTGC TTCTACGCTG CCGATGGACC CGTTTGCTTT TGCCCGAGCA
TGGCTCGATC ACTATCAGGG TGCGTGTGTC GGCAGGCAGG GCCTGGATAT GCTGACCATG
GGTGTGTCTC AGGCCATTCT GAGTCGGGGC TATGTCACCA CGCGCGTGTT ACTGCCGCAG
CAGGACCTCA GCACCGGGAC CTTGCGATTG GCGCTGATCC CCGGCGTGAT CGGCGAGTTG
CGTTTTGCGG AACCGGATAC GCGTGGCACA TGGAAGTCCG CGTTTCCGGC ACGTTCGGGC
GATCTCCTGA ATCTGCGCGA CCTGGAGCAG GGGCTGGAGC AAATGAAGCG TGTGGCCAGT
CAGGATGCCG AGATGCAGAT CGTGCCGACT GCCGTGCCGG GCGTGAGCGA TGTGGTCATC
GCGGTCAAGC GGGCGAAGGC GTGGACCGTG GTGGCGTCGA TTGACAACTC GGGCACGGAG
GCAACGGGAA AATGGCTCGG CAATCTGAGT CTGGGCATCG ATAACCCACT GGGTCTCAAC
GATCTGTTCA ACGTCGGCTA TATGCAGGAC GTTGAGCTTG GCAATCGGAA GCACGGCACG
CGCGGCTGGA ACGGCTTCTA CTCGGTGCCG TGGGGTTACT GGACGGGCAC GCTGTCCGCG
TACTCGAACA CGTACTACCA GCAGATTGCG GGCGTCAACC AGACCTTTGT CTCGAGCGGG
AATTCGCAGA CGGTGGACAT GAAGCTGCAG CGCGTGATTC GCCGCAGCCA GAGCGACGTA
CTGGGTCTGC AGTTCCGGCT CTCGCGCCGC TTTGGCGAGA GCTTCATCGA GGATACGGCA
ATCCCCCAGC AGCGGCGCAA CAACACGTTT GTGGAGGCCG GCTTCACCGA TCGCCATTAC
TTCGGCTCGG CGCAGTTCGA TGGCAGCCTC GTGTATCGCC AGGGCATCGG CGGATTCGGC
TCGCAGGCCG ACACGCTGGC TGTGAACGGC GGGCCGACAT GGCGCTACAG CATGGTCGTG
GCCGATGCCA ATCTGTCGGC GCCCTTCCGG CTCGGCGACC AGATGTTGCG TTACGTGACG
ACCTTCCGTG GCCAGTACAC CGGCGATCGC CTGTATGCGC TGGACATGAT GACCATCGGC
AGCCGCTATA CGGTGCGCGG CTTCGACGGT GAGATGCTGT TGGCCGGCGA TAGTGGCTTC
TACTGGCGCA ACGAACTGCA GGCACCCGTC GCCAACACCG GGCAGGCGCT GTATGCGGGG
CTGGACTACG GACGTGTGTT CGGGCCGTCG ACGGTCGGGC TGGTTGGTAC GCAATTGATC
GGCGCGGTGC TGGGCCTGCG CGGTGGCTTT GGTTCGAAGT TCGGGCGGCT GTCCTATGAC
TTCTTTGTCG GCCTGCCCGT GTACAAGCCC GCCGCCTTTC ATACGTCTGG CGTCACCGGC
GGGATGCAGG TGGCGTACCA GTACTGA
 
Protein sequence
MRIKSMAMTR PLHASLLLLG LSTCAEAQPT GPGRSPATTA ADQQQLTRQQ QEARERAQAI 
EAPGVRAQEI TPLVYPTLPT ETPCFRIDRF VLEVPADLPD SVQVHGASTL PMDPFAFARA
WLDHYQGACV GRQGLDMLTM GVSQAILSRG YVTTRVLLPQ QDLSTGTLRL ALIPGVIGEL
RFAEPDTRGT WKSAFPARSG DLLNLRDLEQ GLEQMKRVAS QDAEMQIVPT AVPGVSDVVI
AVKRAKAWTV VASIDNSGTE ATGKWLGNLS LGIDNPLGLN DLFNVGYMQD VELGNRKHGT
RGWNGFYSVP WGYWTGTLSA YSNTYYQQIA GVNQTFVSSG NSQTVDMKLQ RVIRRSQSDV
LGLQFRLSRR FGESFIEDTA IPQQRRNNTF VEAGFTDRHY FGSAQFDGSL VYRQGIGGFG
SQADTLAVNG GPTWRYSMVV ADANLSAPFR LGDQMLRYVT TFRGQYTGDR LYALDMMTIG
SRYTVRGFDG EMLLAGDSGF YWRNELQAPV ANTGQALYAG LDYGRVFGPS TVGLVGTQLI
GAVLGLRGGF GSKFGRLSYD FFVGLPVYKP AAFHTSGVTG GMQVAYQY