| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5261 |
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| Symbol | fliF |
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| ID | 4042122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 1958818 |
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| End bp | 1960509 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637980679 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_587389 |
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| Protein GI | 94314180 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.046681 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCGA CCGCAACCCT GCCGAACGGC ACGGCCCTGC TCGAAAAGGT CAAGGCCAAC
CCGCGCCTGC CCATGATGCT GGGCGGCGCC GCGCTGGTCG CCGCTATCGC CGTGGGTGTG
ATGTGGTCCC GCGCGCCGGA CTACAAGGTG CTCTATTCCA ATCTGTCGGA GCGTGACGGC
GGTGCCGTGA TCCAGTCGCT CCAGCAGATG AACGTGCCCT ACAAGTTCGC CGAAGGTGGT
GGTGCGGTCA TGGTGCCGGC CGACAAGGTG GCCGAGACGC GCCTGCGCCT GGCCAGCCAG
GGCCTGCCGA AAAGCGGCAC GACCGGCATG GAACTGATGG ACAACCAGAA GTTCGGCATC
AGCCAGTTCG CCGAACAGGT CAACTATCAA CGCGGGCTGG AAGGCGAACT GGCCCGTTCG
ATCGAATCGA TCGGCGCGGT GCAGTCGGCC CGCGTGCACC TGGCGATTCC CAAGCCCACG
CTGTTCGTAC GTGAGCGCCA GAAGCCCACC GCCTCCGTGG TGCTGCAACT CTACCCGGGG
CGCGCCGTCG ATGAAGGCCA GGTGGCCGCG ATCACGCACC TGGTGTCTTC CAGCGTGCCA
GAACTGACGC CGAAGTCGAT CTCGATCGTC GACCAGCAGG GCAACCTGCT GTCCGGCACC
AACGATCGTT CGCTCGATGC CAGCCAGCTC AAGTACGTCC AACAGGTCGA GCAGGGCTAC
GTCAAGCGCG TGGAGTCGAT CCTCGCGCCG ATCCTCGGCA AGGACAACAT CCACGCCCAG
GTCACGGCCG ATGTCGATTT CTCGTCGGTC GAACATACCG ACGAAAGCTA CAAGCCGAAC
CAGGACCCGA CCAAGGCCGC GATCCGCAGC CAGCAGACCA GCGAATCGAA CTCGCAGGGT
GGCACGCCTG TAGGTGGCGT GCCCGGCGCG CTGTCGAACC AGCCGCCAGC CGCCGCCGCC
GCGCCGGTCA CCACGCCGCA ACCGCCGCGC CAGCCCGGCC AGCCGAATCC GCCCGCACAG
GCCAACCAGC CCGCGCAGAC GACCCAGACG ACCCAGACGG CCGAGAAGAC CGGCCCGAGC
AACAGCCGCC GCGACTCCAC CACCAACTAC GAACTCGACC GCGTGGTGCG CCACGTGCAG
CAGGCAGCAG GCGGTGTGAA ACGTCTGTCG GTGGCCGTGG TGGTGAACTA CCGCACCAAG
GTCGATGCCA AGGGCAAGCC GGTGACGGAA GCGCTGTCGG CCAAGGAACT GGCCCAGATC
GAAAACCTGA CCAAGGAAGC GATGGGCTTC TCCGCCGACC GCGGCGACTC GCTGAACGTG
GTCAACAGCC CGTTCACGAG CGACATCAAG ACGGAGCCGG AAGTGCCGGT GTGGAAGCAG
CCGCAGATGA TCGACCTGGC CAAGACCGGC GTCGGCTACC TGCTGCTGGC CCTGCTGGCC
GTGTTCCTGT GGTTCAAGGT CGCGCGTCCG GTGCTGCGCA AGTACACCGC GCCGCCGTTG
CCCGCGCCTA CCGAGACGGC AGCCGCCACC GAAGCCGTTC TGCTGCCGCC GGAAGAAGAA
ACCAATCCGG AAGTGCTGCG CCTGGCCGCG AAATATGAAA GCGATCTCGC CCTGGTGCGC
GACGCCGCGC AACGCGACCC GCGCCTGGTC GCCAGCGTAA TCAAGACTTG GATGGCAAAT
GACGAAGGCT AA
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| Protein sequence | MNATATLPNG TALLEKVKAN PRLPMMLGGA ALVAAIAVGV MWSRAPDYKV LYSNLSERDG
GAVIQSLQQM NVPYKFAEGG GAVMVPADKV AETRLRLASQ GLPKSGTTGM ELMDNQKFGI
SQFAEQVNYQ RGLEGELARS IESIGAVQSA RVHLAIPKPT LFVRERQKPT ASVVLQLYPG
RAVDEGQVAA ITHLVSSSVP ELTPKSISIV DQQGNLLSGT NDRSLDASQL KYVQQVEQGY
VKRVESILAP ILGKDNIHAQ VTADVDFSSV EHTDESYKPN QDPTKAAIRS QQTSESNSQG
GTPVGGVPGA LSNQPPAAAA APVTTPQPPR QPGQPNPPAQ ANQPAQTTQT TQTAEKTGPS
NSRRDSTTNY ELDRVVRHVQ QAAGGVKRLS VAVVVNYRTK VDAKGKPVTE ALSAKELAQI
ENLTKEAMGF SADRGDSLNV VNSPFTSDIK TEPEVPVWKQ PQMIDLAKTG VGYLLLALLA
VFLWFKVARP VLRKYTAPPL PAPTETAAAT EAVLLPPEEE TNPEVLRLAA KYESDLALVR
DAAQRDPRLV ASVIKTWMAN DEG
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