Gene Rmet_5254 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_5254 
SymbolfliD2 
ID4042115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp1954045 
End bp1955517 
Gene Length1473 bp 
Protein Length490 aa 
Translation table11 
GC content63% 
IMG OID637980672 
Productflagellar filament capping protein 
Protein accessionYP_587382 
Protein GI94314173 
COG category[N] Cell motility 
COG ID[COG1345] Flagellar capping protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.782787 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0469121 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTACGA TCTCCAACCT CGGCGTCGGC TCCGGTCTCG ACCTGAGCAG CCTGCTCGAT 
CAGCTCACCA CGGCTGAACA GGCCCCGCTC ACCGCGATCA AGACCCAGCA GAGCAGCTAC
CAGACCAAAC TGTCCGCGTA CGGCCAGTTG CAGAGCATGC TCGCGGCGTT CCAGGCTTCG
GCCAACCAGT TGTCGAACCC CACGTTCTTC CAATCCACCA CGGCAAGCGC AAGCAACACC
TCGGTACTGA GCGCCACCGG CAGCACCACT GCGGTGCCAG GCACCTACTC GGTCAACGTC
ACGCAACTGG CGCAGTCGCA GTCGGTGGTT TCCACCGGAC AGGCATCGCA GACCACCGCC
GTCGGCACCG GCACGATCCA TATCGATTTC GGTGCGATCA CGGGTGGCAC GCTGGACAGC
AACCCGGCCA GCGCCACCTA CGGCAAGTAC ACCGGCGCCA CCTTCACTGC CAATAGCGGC
TCCACCGGCG TCGACATCAC GATCGACAGC AGCAACAACA CGCTGCAGGG CGTTCGCGAC
GCGATCAACA AGGCCAATGC CGGCGTCACA GCCAGCATCG TCAACGACGG TTCGGGCACG
CCCTATCGCC TGGTCATCAG TTCCAACGCC ACCGGTGCCA CGAACAGCGT GCGCATGTCG
GTGAATGAAA CCGATGGCGG CACCGGCCTC TCGGATCTGG CGGCATACGA TCCAGCCGGC
ACGCAGAACA TGCAGCAGAC CATTGCGGCC CAGAACGCCC AGCTCACGGT CAACAACATC
GCCGTCCAGA GCAAGGGAAA TTCCGTGGCG GACGCGGTGC CAGGCGTGGT CCTTAACCTG
ACCCAGACCG GTACGAGCAG TGTGACGGTC CAGCGCGACA ACAGTTCGAT CGTCTCCGGC
GTGCAGGCCT TCGTCGCGGC TTACAACAAC CTCCAGAACA CCGCTGCGTC GCTGTCGGCC
TACGACCCGA GCACCAAGAC CGGTTCTCCC CTGACGGGCG ATTCCACGTT GAGCATCATC
CAGTCCCAGA TGCGCAGCGT GATGAACACG CCGCAGTCGG GCAACGCGCT CACCACGCTG
TCGCAGATCG GCATCTCGTT CCAGAACGAC GGCACGCTTG CTCTCGACAC CACCAAGCTG
ACCTCGGCGC TGAACAGCAA CCCCGGCGCG GTTGCGGGGC TGTTCGGCAA CACCGACGGC
GTGAGTGGCT ACGGCAACCA GATCAACAAG CTCGTCACGG GCCTGACCAG CAGCAACGGC
GCGTTGACGA CGGCCACGGC CGGCATCAAC AACACGCTCA AGGATCTGAG CAATCAGTAC
GATGAAACGC AGACCCGCGT CGACGCGGTC ATCGCCAACT ACAAGACGCA GTTCACGCAA
CTCGACGTGA TCATGTCGCA GATGCAGAAC ACCAGTTCGT ACCTGACGCA GCAGTTCAGC
GCCATGAACG GCACAAGCAG TAGCAAGAAG TAA
 
Protein sequence
MTTISNLGVG SGLDLSSLLD QLTTAEQAPL TAIKTQQSSY QTKLSAYGQL QSMLAAFQAS 
ANQLSNPTFF QSTTASASNT SVLSATGSTT AVPGTYSVNV TQLAQSQSVV STGQASQTTA
VGTGTIHIDF GAITGGTLDS NPASATYGKY TGATFTANSG STGVDITIDS SNNTLQGVRD
AINKANAGVT ASIVNDGSGT PYRLVISSNA TGATNSVRMS VNETDGGTGL SDLAAYDPAG
TQNMQQTIAA QNAQLTVNNI AVQSKGNSVA DAVPGVVLNL TQTGTSSVTV QRDNSSIVSG
VQAFVAAYNN LQNTAASLSA YDPSTKTGSP LTGDSTLSII QSQMRSVMNT PQSGNALTTL
SQIGISFQND GTLALDTTKL TSALNSNPGA VAGLFGNTDG VSGYGNQINK LVTGLTSSNG
ALTTATAGIN NTLKDLSNQY DETQTRVDAV IANYKTQFTQ LDVIMSQMQN TSSYLTQQFS
AMNGTSSSKK