| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5244 |
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| Symbol | |
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| ID | 4042105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 1942311 |
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| End bp | 1943852 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637980662 |
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| Product | major facilitator superfamily transporter |
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| Protein accession | YP_587372 |
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| Protein GI | 94314163 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.249195 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCTC CGCAAGCGCC CTCCGCCCCG CATTCACCCC CAGACGTGCC CGTGATGCAG
GTTATCTTCG GCCTGATGCT GGCCATCATG CTGGGTGCCC TCGAACAATC GATCGTGGCC
GTGGTCCTGC CCGAGATCGC CTTGCAGCTC AACGGTTTCG AGGACATGGC GTGGGTGATC
TCCGCCTATC TGGTGGCGTC CACCGTGGTT ACGCCGATCT ACGGCAAGCT GTCCGACGTG
CTCGGGCGCC GCTCGGTGCT GACGTTCTCG ATCGTGCTGT TCGTGCTGGC GTCGATCGCC
TGCGCGATGG CTACGACGAT GCCGATGCTG ATCGTTGCGC GCATTCTGCA GGGCCTTGGC
GGTGGCGGCC TGATCTCGGT ATCGCAAGCA ACGATCGCCG ACGTGGTGCC ACTACGTGAA
CGCGGCAAGT ACCAGGGCTA CGTCAGCGGC GTCTGGGCCG TGGCCAGCAT GGCCGGGCCC
GTGATTGGCG GCTACCTTGC GCACTTCCTC TCATGGCGCT GGATTTTCTG GATCAACATT
CCGCTGGGGC TGATCGCGCT GATCGTGGTG CGCCGGGCGC TGCGGCATCT GCCGGTCAGC
GGACGCAAGC ATCGCATCGA CTACCTTGGC GCGCTGCTGT TTGGTGGCGG CCTGTCCGGC
GTGCTGGTGT TCCTGACGCG GATGGGGCAG GGCCACTCGC CGCTGGAGCC GCAGACGATC
GGCCTGCTGG CTGCCGGGCT GATCGGTCTG GTGCTTTTCA TCTGGCAGGA GCGGCGTGCC
GTCGACCCGG TGATTCCGCT GAAGATGCTC GCCGTGCCGA CCGTCGCGAT CTGCTGCCTG
ACGCTGTTCC TGTGCTTCTT CCAGTTGATC GCGATGTCGG TGCTGCTGCC GCTGCGCTTC
CAGGTCGTGG GCGGCGCGGG GGCCGACACC GCCGCGCTGC GGCTGGTGCC GCTGACGCTG
GCCATTCCGT TCGGCGCCTA TGCGTCGGGC CGGCTGATGT CGTGGAGCGG GCGTTACAAG
CCGCTGCAAC TGGCTGGCTG TCTGGTGGCG CCGATTGCCA TCGTCGGGCT GGCCTTTGTG
CCGCCGCAGG CGGTGGTGCC GGCCGCGCTG GTGATGATCG TCCTGGGCCT GTCAATCGGC
CTGCAACTGC CGAGCGGGCT GGTGGCCACG CAGAACTCGG TGCCGCCGCA GCAGGTTGGC
ATCGCCACCG CGCTGACCGC CTTCTCGCGC CTGCTTGGTG GCGCAGTGGG CGTGGCGGTG
CTGACCACGG TGCTGATCGC GCTGCTACGC CATAGCGGCA TGGCGGTCAG TGACCTGCAT
GGCGGCGAGG ATGTGCTGAT GAGCATGTTC CGGCGGGCCA TGGATGCGGG GGATCAGGGC
GATGCTGCCG CGGTGCGCGA GGCGGCGGAG CATGCCTTCC GCCTGCTGTT CCTGATGAGC
GCGGGCGTGT CGTTGATCGC GCCGTTCTTC GTCATGCGGC TCAAGGAGAA GACGCTGCGC
GGCAGCCCGG CCGGGGCAGC GGCGTCCGCC GCTGCCGAGT GA
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| Protein sequence | MSAPQAPSAP HSPPDVPVMQ VIFGLMLAIM LGALEQSIVA VVLPEIALQL NGFEDMAWVI
SAYLVASTVV TPIYGKLSDV LGRRSVLTFS IVLFVLASIA CAMATTMPML IVARILQGLG
GGGLISVSQA TIADVVPLRE RGKYQGYVSG VWAVASMAGP VIGGYLAHFL SWRWIFWINI
PLGLIALIVV RRALRHLPVS GRKHRIDYLG ALLFGGGLSG VLVFLTRMGQ GHSPLEPQTI
GLLAAGLIGL VLFIWQERRA VDPVIPLKML AVPTVAICCL TLFLCFFQLI AMSVLLPLRF
QVVGGAGADT AALRLVPLTL AIPFGAYASG RLMSWSGRYK PLQLAGCLVA PIAIVGLAFV
PPQAVVPAAL VMIVLGLSIG LQLPSGLVAT QNSVPPQQVG IATALTAFSR LLGGAVGVAV
LTTVLIALLR HSGMAVSDLH GGEDVLMSMF RRAMDAGDQG DAAAVREAAE HAFRLLFLMS
AGVSLIAPFF VMRLKEKTLR GSPAGAAASA AAE
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