Gene Rmet_4942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_4942 
SymbolgabD 
ID4041804 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp1607058 
End bp1608506 
Gene Length1449 bp 
Protein Length482 aa 
Translation table11 
GC content66% 
IMG OID637980363 
Productsuccinate-semialdehyde dehydrogenase I, NADP-dependent 
Protein accessionYP_587073 
Protein GI94313864 
COG category[C] Energy production and conversion 
COG ID[COG1012] NAD-dependent aldehyde dehydrogenases 
TIGRFAM ID[TIGR01780] succinate-semialdehyde dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.498743 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACTCA AGGACCCTTC GCTGTTCAAG CAACTGGCCT ATGTCGACGG TCAATGGATC 
AGCGCCGATT CGGGCGCCAC GTTCGACGTC ACGGACCCGG CCACTGGCGA GGTCATCGCC
CGGGTGGCCG ACCTGGGTGC TGCCGAGACC ACGCGCGCCG TTGCTGCCGC GGAAGTCGCC
CAGAAAGCCT GGGCGGCAAA GACCGGCAAG GAGCGCGCCA ATATCCTGCG CCGCTGGTTC
GACCTGATGT TGGCCAATAC CGACGACCTG GCCTACCTGA TGACGCGCGA GCAAGGCAAG
CCGCTGGCCG AGGCCAAGGG CGAGATCGCC TACGCCGCCA GCTTCATCGA GTGGTTCGCC
GAGGAAGCCA AGCGCGTGGA CGGTGAAGTG CTGGCCACGC CTGCCGCCGA CAAGCGGCTG
GTCACGCTGC GCCAGCCGGT AGGTGTGTGC GCCGCGATCA CCCCGTGGAA CTTCCCGGCC
GCGATGATTA CGCGCAAGGT GGCGCCGGCG CTGGCCGCTG GCTGCGCGAT CGTGATCAAG
CCGGCCGAAC TGACGCCGCT GTCCGCATTC GCGCTGGCCG AACTCGCGCA TCGCGCCGGC
GTGCCGGCAG GCGTGCTGCA AGTTGTCACC GGTGACGCCC GGAACATTGG TGGCGTGCTG
ACGGCCAGCC CGATCGTGCG CAAGCTGTCG TTCACGGGCT CGACGGAAGT GGGCCGCATC
CTGATGGCTC AGTCGGCGCC GACCATCAAG CGCCTGTCGC TCGAACTCGG TGGCAATGCG
CCGTTCATCG TCTTTGACGA TGCCGACGTC GATGCGGCCG TGGAAGGCGC GATCGTCGCC
AAGTACCGCA ACGGCGGCCA GACCTGCGTG TGCGCGAACC GCTTCTACAT CCAGGACGGC
ATTTACGATG CGTTCGCCGC TAAGTTTGCC GAGCGCACCG CTCAGCTGCG TGTCGGCAAC
GGGCTCGAGG CAGGCGTGGT GATCGGCCCG CTGATCGAGG ACGCCGCGAT CGAGAAGGTG
AATTCGCTGG TCGAGGATGC CACGTCAAAG GGCGGCAAGG TACTGGCCGG TGGCGGCAAG
CACCCGCTCG GCGGAACGTA TTACACGCCG ACCGTGATCG GCAATGCCAC CGCCGACATG
CGCATGGCGC GCGAAGAAAT CTTCGGGCCG GTGGCACCGC TGTTCCGCTT CAAGCAGGAC
GACGAAGCCG TTGCCGCCGC CAACGCCACC GAGTATGGCC TGGCCGCCTA TCTCTACACC
CGCGACATCT CGCGCGCATG GCGCACCGCC GAGGCGCTGG AGTACGGCAT GGTCGGCCTG
AACACGGGCC TGATCTCCAA CGAGGTGGCA CCGTTCGGCG GCATCAAGCA ATCCGGCGTC
GGCCGCGAAG GCTCGCGCCA CGGCATCGAG GAATACCTCG AGATCAAGTA TCTTTGCCTG
CAGATGTGA
 
Protein sequence
MQLKDPSLFK QLAYVDGQWI SADSGATFDV TDPATGEVIA RVADLGAAET TRAVAAAEVA 
QKAWAAKTGK ERANILRRWF DLMLANTDDL AYLMTREQGK PLAEAKGEIA YAASFIEWFA
EEAKRVDGEV LATPAADKRL VTLRQPVGVC AAITPWNFPA AMITRKVAPA LAAGCAIVIK
PAELTPLSAF ALAELAHRAG VPAGVLQVVT GDARNIGGVL TASPIVRKLS FTGSTEVGRI
LMAQSAPTIK RLSLELGGNA PFIVFDDADV DAAVEGAIVA KYRNGGQTCV CANRFYIQDG
IYDAFAAKFA ERTAQLRVGN GLEAGVVIGP LIEDAAIEKV NSLVEDATSK GGKVLAGGGK
HPLGGTYYTP TVIGNATADM RMAREEIFGP VAPLFRFKQD DEAVAAANAT EYGLAAYLYT
RDISRAWRTA EALEYGMVGL NTGLISNEVA PFGGIKQSGV GREGSRHGIE EYLEIKYLCL
QM