Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_4735 |
Symbol | garP |
ID | 4041596 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007974 |
Strand | - |
Start bp | 1378805 |
End bp | 1380166 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637980156 |
Product | galactarate transporter |
Protein accession | YP_586866 |
Protein GI | 94313657 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2271] Sugar phosphate permease |
TIGRFAM ID | [TIGR00893] d-galactonate transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.388057 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.513803 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGCCA CCCCCACCAC AGGCGCTGCA GCCGCATCCA CCGCGCGGCG CACCAATGTC CGTTACTGGA TTCTCGCGCT GATTTTCATC GTGACCACGG TCAACTACGC GGATCGTGCC ACGCTGTCGA TTACCGGGCC CGCGATGCGC GAGGAATTCG GTTTCTCGGC CGTCCAGATG GGCTATATCT TCTCGGCCTT CAGTTGGTCG TACGTGATGG CGCAGATTCC TGGCGGCTGG CTACTCGATC GCTTTGGCGC CCGGCGCATC TATGCCGTGA GCATCTTCCT CTGGTCATTC TTCACGCTGC TGCAGGGGTG GGTCGGCATC TTCGCCTCGA TGGGAGCAAC GATGACGGCG CTCTTCATGC TGCGTTTCGC CGTGGGCCTG GCCGAGTCCC CGGCATTCCC GGCCAATGCA AAGGTGGTGG CAAGCTGGTT CCCGACCGCC GAGCGCGGCA CCGCGTCGGC CATCTTCAAC GCCGCGCAGT ACTTCGCCGC CGTGGTGTTC ACGCCGCTGA TGGCATGGAT CGTTCACAGC ATGGGCTGGC ATCACGTCTA CCTGTGGATG GGCATCATGG GCATGCTGCT GGCGATGCTC TGGCTCAAGG TCATGCGCAG CCCGGTCACG CATCCGGCTG TGAATCGCGC GGAACTTGAG CACATCGAGC AGGGCGGTGG CCTGATTCAC ATGAATGAAG GGGCAGGCAA GTCAAAGCAG GGCGCTAATC CCGCTGGCTG GTTCTATGCC CGGCAGTTGC TGTCGAACCG GATGCTGGCC GGGGTCTATC TGGGCCAGTA CTGCATCAAC GTGCTGACGT ACTTCTTCCT CACGTGGTTT CCGGTGTACC TGGTGCAAGC GCGCGGCATG TCGATCCTGA AGGCGGGTTT CGTCGCGTCC CTGCCGGCCA TCTGCGGTTT TCTCGGCGGC GTGCTGGGCG GCGTGATCTC CGACCACTTG CTGCGCCGCG GCTACTCACT GACCATCGCC CGCAAGGTGC CGATCGTGGC GGGCATGTTG CTGTCGGTGT CCATGATCGC CTGCAACTAC GTGGATGCCG AATGGCTGGT GGTGGGCATC ATGGCGCTCG CGTTCTTCGG CAAGGGCATC GGCGCGCTGG GCTGGGCCGT GGTGGCTGAC ACTGCGCCCA AGGAAGTGAT CGGCCTGGCG GGCAGCATCT TCAACACGTT CGGCAATATC GCCGGCATTG TGACGCCGAT CGTGATCGGC TATATCCTGA GCGCGACAGG CTCGTTCAAC GGCGCGCTGG TGTTCGTGGG TATCAATGCC CTGGTCACCG TGCTGAGCTA TCTGGTGATC GTCAAGGACA TTCGCCGCGT CGAGCTGAAG CACCCCCAAT AA
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Protein sequence | MNATPTTGAA AASTARRTNV RYWILALIFI VTTVNYADRA TLSITGPAMR EEFGFSAVQM GYIFSAFSWS YVMAQIPGGW LLDRFGARRI YAVSIFLWSF FTLLQGWVGI FASMGATMTA LFMLRFAVGL AESPAFPANA KVVASWFPTA ERGTASAIFN AAQYFAAVVF TPLMAWIVHS MGWHHVYLWM GIMGMLLAML WLKVMRSPVT HPAVNRAELE HIEQGGGLIH MNEGAGKSKQ GANPAGWFYA RQLLSNRMLA GVYLGQYCIN VLTYFFLTWF PVYLVQARGM SILKAGFVAS LPAICGFLGG VLGGVISDHL LRRGYSLTIA RKVPIVAGML LSVSMIACNY VDAEWLVVGI MALAFFGKGI GALGWAVVAD TAPKEVIGLA GSIFNTFGNI AGIVTPIVIG YILSATGSFN GALVFVGINA LVTVLSYLVI VKDIRRVELK HPQ
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