Gene Rmet_4649 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_4649 
Symbol 
ID4041510 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp1279530 
End bp1281017 
Gene Length1488 bp 
Protein Length495 aa 
Translation table11 
GC content66% 
IMG OID637980070 
ProductRND efflux system outer membrane lipoprotein 
Protein accessionYP_586780 
Protein GI94313571 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.728729 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATCGA AAGCACTTCC CGGCACCCAT GCCCAAGGAC TGGTTAAACG TACCGCGCGC 
GCCGTGGCCC TGGCCGCCGC CACACTCGCT GCACTGGGCA TGGCCGCCTG CGCGGTCGGC
CCTGACTACC GCACGCCGGA TAGCGAGATG CCGACGCAGT ACCAGCACGC CGCCGACGTG
GCAGCGATCA ACGACGCGCG CGAACCGGTG GCGCTGGATA CGTGGTGGGC CGGCTTCCAG
GACCCGGTGC TGACAAAGAT CGTCGAGCGG GCCCTTGAAC AGAATCTCGA CATGGCGGCG
TCAATTGCCC GCGTGGCGCA GGCCCGTGCC GCCGCCAACT TCGCTGGGGC CGAGTTGCTT
CCGCAAGGCA ATGCCTATAG CGACGTGACC AAGCTGCATC AATCCGTACA AAGCCCGCTG
GGCAAGATCG GCAGCACATT CCCCGGATAT GACCGCAACC AGACGCTCTA TTCGGTGGGC
GCTGCGGCCA CGTGGGAAAT CGACATCGCT GGCGGGCTGC GGCGCGGTGC CGAGGCGGCC
AATGCCGAAC TGCAGGCGGC AGAGGCGAAC CACATGGGCG TTCGGATTCT CGTGGCAGCG
GAGGCGGCGG ACGCCTACTT CCGTGTGCGG GGGGCTCAGG CTCGCATCGC CATCGCGCAG
CAACAGGTCG AGACCAACCA GCGCCTGCTT GATCTCGTGC GTTTGCGGTT GGCCGATGGC
ATCGGGGCGG AGCGCGAGCA GGCGCAGGCC GAGGCCCAAC TCTCGCAGAC GCGCGTCACG
ATTCCGCCGC TGCAGATCGA ACTGGAAACG CAGCTTAATC GCCTCGACGT CCTGATGGGC
GCGCAACCGG GCACCTACGC AGCCGAGTTG CGCGATTCGA AGCACGAAAC GCAGGCGGTG
CCACAAGTCG CCTTGGCACA GGGTCCGGCA AACCTGCTGG AACGTCGCCC AGACGTCATT
GCCGCCGAAC GCAGGCTTGC GGCGTCGAGT GCGCGCATTG GCGTGGCCAC GGCGGAGTAC
TACCCGAAGG TTTCGCTATC GGCATTGCTT GGATTCGAAA GCCTGTCCGC CGGCAAGCTG
TTCACCGCGC AGGCCTTCCA GCCTGCGGCG GCGGCTGGGC TGCGCTGGCG GCTGTTCGAT
TTCGGCCGGG TCAATGCGGA AGTCGCGCAG GCCAAGGGCG CCAATGCCGA AGCGTTGGCC
AGCTATCGCA AGTCGATGCT GCAGGCCACC GAGGACGTCG AAAACGCATT GATCTCGCTG
GCGCAGCTCG AATCGCAAAA CCGCGAACTG GCCGTAGAGA TCCGTGCGCA TGAGCGCGCG
CGAAACGCAT CCGAGGATGC CTACAAGGGC GGGGTGGTCA GCCTCTATGA AGTGCTGGAC
GAAGACCGGC AATTGCTGGC TGCACGCGAC CAGCAGGCAA GGGTGCAGGC GGATAATGCA
CGGGCGGCGG TGTCGGCGTT CCGGGCGCTG GGAGGTGGAT GGTCCTGA
 
Protein sequence
MASKALPGTH AQGLVKRTAR AVALAAATLA ALGMAACAVG PDYRTPDSEM PTQYQHAADV 
AAINDAREPV ALDTWWAGFQ DPVLTKIVER ALEQNLDMAA SIARVAQARA AANFAGAELL
PQGNAYSDVT KLHQSVQSPL GKIGSTFPGY DRNQTLYSVG AAATWEIDIA GGLRRGAEAA
NAELQAAEAN HMGVRILVAA EAADAYFRVR GAQARIAIAQ QQVETNQRLL DLVRLRLADG
IGAEREQAQA EAQLSQTRVT IPPLQIELET QLNRLDVLMG AQPGTYAAEL RDSKHETQAV
PQVALAQGPA NLLERRPDVI AAERRLAASS ARIGVATAEY YPKVSLSALL GFESLSAGKL
FTAQAFQPAA AAGLRWRLFD FGRVNAEVAQ AKGANAEALA SYRKSMLQAT EDVENALISL
AQLESQNREL AVEIRAHERA RNASEDAYKG GVVSLYEVLD EDRQLLAARD QQARVQADNA
RAAVSAFRAL GGGWS