| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4607 |
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| Symbol | oprC |
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| ID | 4041468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 1232297 |
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| End bp | 1234471 |
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| Gene Length | 2175 bp |
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| Protein Length | 724 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637980028 |
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| Product | TonB-dependent copper receptor |
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| Protein accession | YP_586738 |
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| Protein GI | 94313529 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0702651 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0726755 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATCAC GAGCGGGTGG GTGTCATTGC GCTGTTCAAA TGCTTACCCC AAACAAAATC
CAGCGTGCCT GCGCGCTGTC CCCGTTCGAT CGCGATCGCT ATTCGCATCG CGCATCGGTC
CTGGTGCTGT CGCTCGTTGC CTGCGCACCC TTTGCCAGCC GTGCCGCTGA GCACACGGAA
CATGCCGAGC ACACCAGCAA CGACGCTGCG GCCGAAGTTG TCCTGCCGAC TGTCGAGGTC
TCCGCGAGTC CCCTCAATAT CCCGATCGTG GTCGTGACGG ACCCCAAGGC GCCGCGACAG
CCTTTGCCCG CGAGCGACGG CGCCGATTAC CTGAAAACCG TGCCCGGGTT CACCGCGATC
CGCAATGGCG GCAGCAATGG CGACCCCGTC CTGCGCGGCA TGTTCGGGTC CAGACTCAAT
ATGCTGGCCA ACGGTGCGCC GAGCCTGGGC GCATGTCCCG GCCGGATGGA CCCGCCCACC
TCGTACATCG CCCCGGAGAG CTACGACAAG GTCACCGTGA TCAAGGGCCC GCAGACCGTG
CTCTACGGCC CAGGCGCATC GGCCGGCACT GTGCTGTTCG AGCGCGAGGC GCCACGTTTC
GACAAACCGG GCGTGCACAT GGATGCGAGT CTGGTGGGCG GATCGAATGG CCGCAATGAC
GAGAACCTCG AAGTCACCGC CGGCACCCCG GAAGTCTACG GGCGCCTGAA TGCCAACAAG
TCGTACGCCC AGGACTATCG CGACGGCAAC GGCAATACCG TGCCTTCGGC CTGGAGCAAG
TGGAATGCTG ACGCGGCGGT GGGCATCACT CCCGATGCCA ACACGCTCAT CGAGCTCGCC
GCCAGCACCG GTGACGGCAA CGCCCGATAC GCCGGGCGCG GCATGGACGG CGTGCGTTTC
AAGCGCGACA GTTTCCAGTT GCGCTTCAAG AAGCAGAACA TCGGCGAATT CCTTCGCCGC
GTCGACGCCG AGGTGTATTA CAGCGATGCC GACCATCGCA TGGACAACTA CACCTTGCGA
ACACCGCCTC CCGGCAGCAT GGCCATGGCT TCGGACGTGC GCCGCCGTAC CGCAGGCGGT
CGCATCGCCG CGACATTCGA CCTCGGTGAG AACGTGCAAT GGGTGGCGGG CTTCGATGCG
CAGTCGAATA ACCTCGATAC ACGCTCGGCC ATGGGCGTGC TGAGCCCGTC GTCGATGCCG
TGGAATCCGT CGGCGTCGCT TTCGAACTAT GGTCTCTTCA GCGAACTGAC CTGGGAGATC
AACGACGCAC GGCGCGTGGT TGCCGGGGCG CGGCTGGATC GCTCGGGCGC CACGGACGAG
CGCGCCACGG TCAGTGGGTC GATGGGCATG ATGAAGATGA CGAATCCCAC CGCGGATGAG
ACACGCAGTC AATTGCTGCC GAGCGGTTTC CTGCGCTACG AGCACACGCT CGCGGAAACG
CCGATGACCT GGTACGCGGG ACTCGGGCAC ACCGAGCGCT TTCCTGACTA CTGGGAGCTG
TTCTCGCCGA AACGTGGCCC GTCTGGGTCG ACAAACGCGT TCACAGGCAT TGAGCCCGAG
AAGACCACCC AGCTCGACAT CGGCGCCCGC TACCGCACCA AGACGCTCGA CGCCTCGATT
TCGGCGTACG CCGGCTACGT CAACAACTTC ATCCTGTTCT CCTATGGCTC CGGCGCGACC
GCGAACCTGT CGCAGGCCAG CAATGTCAAC GCGCAGATCA TGGGCGGTGA GATCAGCACG
TTCTGGTTCC CCAGCGCGAG CTGGAAGCTG GGCGGGTCAG TCGCCTATGC CTGGGGCCGC
AACGTGGACA GCGGGGCCCC GCTGCCGCAG ATTCCGCCAC TCGAGATGCG TCTGAGCGCC
GATTACTCGT GGCGCGAGTG GTCGGTTGGC GGTTTGTGGC GTGTCGTGGC GCCGCAGCGT
CGCTATGCGC TGCACGAGGG GAATGTGGTC GGTCAGGATT TTGGGCCGAG CGCTGGCTTT
GGCGTGGTCT CGGTGAATGC GCAGTACAAC TTCAACAAGA GCGCGCAGTT GTCGATCGGC
ATCGACAACC TGTTCGACAA GGCCTACACC GAGCATCTGA ACCTCGCCGG CAACGCCGGC
TTCGGCTACG CCGCCTCCAC GCCAATCATG TCACCGGGAC GGACGTTCTG GGGGCGGTTG
CGCATCAAGA TCTGA
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| Protein sequence | MSSRAGGCHC AVQMLTPNKI QRACALSPFD RDRYSHRASV LVLSLVACAP FASRAAEHTE
HAEHTSNDAA AEVVLPTVEV SASPLNIPIV VVTDPKAPRQ PLPASDGADY LKTVPGFTAI
RNGGSNGDPV LRGMFGSRLN MLANGAPSLG ACPGRMDPPT SYIAPESYDK VTVIKGPQTV
LYGPGASAGT VLFEREAPRF DKPGVHMDAS LVGGSNGRND ENLEVTAGTP EVYGRLNANK
SYAQDYRDGN GNTVPSAWSK WNADAAVGIT PDANTLIELA ASTGDGNARY AGRGMDGVRF
KRDSFQLRFK KQNIGEFLRR VDAEVYYSDA DHRMDNYTLR TPPPGSMAMA SDVRRRTAGG
RIAATFDLGE NVQWVAGFDA QSNNLDTRSA MGVLSPSSMP WNPSASLSNY GLFSELTWEI
NDARRVVAGA RLDRSGATDE RATVSGSMGM MKMTNPTADE TRSQLLPSGF LRYEHTLAET
PMTWYAGLGH TERFPDYWEL FSPKRGPSGS TNAFTGIEPE KTTQLDIGAR YRTKTLDASI
SAYAGYVNNF ILFSYGSGAT ANLSQASNVN AQIMGGEIST FWFPSASWKL GGSVAYAWGR
NVDSGAPLPQ IPPLEMRLSA DYSWREWSVG GLWRVVAPQR RYALHEGNVV GQDFGPSAGF
GVVSVNAQYN FNKSAQLSIG IDNLFDKAYT EHLNLAGNAG FGYAASTPIM SPGRTFWGRL
RIKI
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