| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4578 |
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| Symbol | dppA |
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| ID | 4041439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 1193231 |
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| End bp | 1194958 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637979999 |
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| Product | dipeptide/oligopeptide/nickel ABC transporter transport system, substrate binding protein |
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| Protein accession | YP_586709 |
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| Protein GI | 94313500 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.364144 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00551772 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTGCCCA TTATCAAGGC GAATGTCGGC AGGACGAACT GGCCACTGAT GGCGGCGAAA
GCCGTGGCGG CTGCAGCGGC GGCATTGGCC TGCGGCATCG CGGCCGCGCA GGCGGATGCG
CCAAAGTACG GTGGCACGCT TGAGGTCGGA TCGGTCTACC CCACCATCTC GGCGTTGTCC
TGGGATCTGG CGGACTGGAA CTGGAAGCAG AACTACGACA CCGGTCAGGT CTATGAACAA
CTGTTTGCCG CGGATCTCTC AAAGTCGCGC CGCAACGGCG GAAAGTACGC CTTCCAGGCC
GATGCCTGGC TGCCGCCGGA CGCGATCCGG GGCGAGCTGG CCGAAAGCTG GAAGTGGATC
GACCCGCTGA CGCTCGAGGT CAAACTGCGC AAAAACGTCC GCTTCCCCGC GAAGCCGGGC
GTAATGGAAG AACGGGAGCT GACGTCGGAA GATGTGCTGT TCAGCTACGG CCGCATGAAC
GCAAGCGCCA AGAAGATCCC CAGCTACTAC GACTACCTGA CCAAGGTCGA AGCACCGGAC
AAGTACACGG TCATCTTCCG CTTCAAGGAA TTCAATGCCG AGTGGGACTA TCGCTTCGGC
TGGGGCTACT ACTCCGGCAT CATGCCCAAG GAGGTAGCCA CCGCCGGGGC CGCGAACTGG
AAGAACGTCA CCGGCACCGG CCCGTTCACG CTGAACCAGT TCACGCAGGG CAACTCCACC
ACCTATGTAA AGAACGCGCA GTACTGGGAC ACGGACAAAA TCGGCGGCAA GGACTACAAG
TTGCCGTTCG TCGACAAGAT GGTGCTGCGC ACCGTCAAGG ATGAGGCCAC GCGCAACACC
ATGCTGCGCA CCGGCAAGCT CGATGTGCTG GAACTGGTGC GCTGGACTGC CGTGGACGAG
CTCAAGAAGA GCGCACCGCA ACTCAAATGG TCGAAGTGGC TCTCGTACAC CGGCCAGTAC
CTGGCGCTGC GCGTCGATAC CAAGCCGTTC AACGACATCC GCGTGCGCCG CGCTCTCAAT
ATGGCGGTCA ACAAGCAGGA GATCGTCAAG CAGTACTACG GCGGCAACGC GGAGCTTTTC
GCCTACCCGC AGCATCCCGA CTACGGTGGC TACTTCGAGC CGCTGAGCAC GATGCCGGAT
TCGGTGAAGG AGCTGTTCAC CTACAACCCC GAGAAGGCGA AGAAGCTGCT GGCGGAGGCC
GGCTATCCGA AGGGCTTCAA GTTCAAGGTT CAGGTATGCG CCTGCAACCA GGACCACATG
GAGATGCTGC CGCTGATCGG CGCTTACCTG GAACAGGTCG GCGTGAAGAT CGAGATCCAG
CCGATGGAGT ACGGCGCGTA CCTGTCCGCG ATGACCACGA AGACCAATGC GCCTGGCTAC
ATGATGGCGA ATGGCCATAC GAATCCGACC ACCACGTTGC GCAAGAGCTT CGTGGCCGGA
CAGGTGTGGA ACGCCTCGCA ATGGAATGAT CCGGCCTTCA CGGCCCGCGT CGACCAGGCC
TTCCAGATCC GCGACGAAGG CAAGCGCCAG GAGGCGATCC GCGCCATGAC CCGCGACATC
GTCGCGCAAG CGCCGTACAT CTGGCTGCCG ACGCCCTACG TATTCACCGC CTGGTGGCCG
TGGGTCAAGA ACTACGACGG CGAACTGCGC GCTGGCGCCG TGCGTAGCGG CCCGATCTAC
GCGCGCGCAT GGATCGATCA GGAGATGAAG AAGAAGCTTG GCTTCTGA
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| Protein sequence | MVPIIKANVG RTNWPLMAAK AVAAAAAALA CGIAAAQADA PKYGGTLEVG SVYPTISALS
WDLADWNWKQ NYDTGQVYEQ LFAADLSKSR RNGGKYAFQA DAWLPPDAIR GELAESWKWI
DPLTLEVKLR KNVRFPAKPG VMEERELTSE DVLFSYGRMN ASAKKIPSYY DYLTKVEAPD
KYTVIFRFKE FNAEWDYRFG WGYYSGIMPK EVATAGAANW KNVTGTGPFT LNQFTQGNST
TYVKNAQYWD TDKIGGKDYK LPFVDKMVLR TVKDEATRNT MLRTGKLDVL ELVRWTAVDE
LKKSAPQLKW SKWLSYTGQY LALRVDTKPF NDIRVRRALN MAVNKQEIVK QYYGGNAELF
AYPQHPDYGG YFEPLSTMPD SVKELFTYNP EKAKKLLAEA GYPKGFKFKV QVCACNQDHM
EMLPLIGAYL EQVGVKIEIQ PMEYGAYLSA MTTKTNAPGY MMANGHTNPT TTLRKSFVAG
QVWNASQWND PAFTARVDQA FQIRDEGKRQ EAIRAMTRDI VAQAPYIWLP TPYVFTAWWP
WVKNYDGELR AGAVRSGPIY ARAWIDQEMK KKLGF
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