| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4502 |
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| Symbol | fabD |
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| ID | 4041361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 1102857 |
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| End bp | 1104551 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637979924 |
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| Product | long-chain-fatty-acid--CoA ligase |
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| Protein accession | YP_586636 |
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| Protein GI | 94313427 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.404 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.065196 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCCG CCAGTACATC CCAGCCTTAC CGTTCTCCCG CCTGGCCTGC CGGCCTGCCT
GGCACGCTGC ATGTGCCGCA GACCAGCCTG TTCCACAACC TGGAAGTGGC CGCGCGGCGC
TATCCCGGCA AGACGGCGAT CCAGTATTTC GGCACCGCGA TCACCTATGC GGAACTGCTG
GATGACGTCG AACGGATGGC CGGCTATCTG CAGCAAAGCT GCGGCATTCA GCCCGGGGAT
AGGGTAGTGC TTTACAGCCA GAACGCCCCG CAGTTCATCG TGGCGTACTA CGCCATCCTG
CGTGCCGAGG CGGTGGTCGT GCCAGCCAAT CCGATGTGGC TGGAAGCCGA ACTGGAGCAT
GTGGTTGCCG ATAGCGGGGC GGTGGCCGCG TTCTGCGGCA GCGAATTGTA TGAGCGCGTC
GCGTCGCTGC ATGGCAAGGC GCTGCGTCAT GTGATCACGT ACCACTACGC GGGGATGCTG
CGCGACGATG GTGGCCTGCC GGTTCCGGCC TGGCTGCGCG AGCCTGCTCC CGCGTCGCGC
GCGGCCCCAG GTGGCGCCAT GCCAGTGGAC TGGGACACCG CGCGCAATGC TGGCCAGCGT
CCGCGCGCGC ACGAGGCTGG CTACAACACG CTTTGCATGC TGGCATATAC CTCCGGCACC
ACGGGCAATC CCAAGGGCTG CATGCATACC CACGGCACCA TGATGAGTTC CGCGGTGGGC
TCGCAAGTCT GGCGCAGCAG TTCGCCGGAA TCGGTGGTGC TCGCGGTGGC GCCGATGTTC
CACCTGCTGG GCATGCAGAA CTGCATGCAT TCGCCGATCT ACCTGGGTGC CACCGTGGTG
CTGATGCCGC GCTGGGACCG CGCGCTTGCC GCCGATCTGA TCGAGCGCTA CCGCGTCTCG
GCCTGGGGCG CGCCGCCGGC CATGCTGGTG GACTTTTTCG CGCAGCCCGA TGTGGCCCGG
CGTGACCTTT CCAGCTTGGC TTTTCTGGGT GGCGGTGGCG CGGCCATGCC CGACGCGGTG
GCCAATATGT TGCAGGAACG CTTCGGCCTG CCGTACGTCG AGGCCTATGG CATGACCGAG
ACCGCGTCGT TCCTGCTGTC CAACCCGCGC CAGAAGCCCA AGCGTGAGTG CCTGGGCATT
GCCACCTTCG GCGTGGACGC CCGCGTGGTG GACCCCGAAT CGCTCGCCGA ACTGCCGCAG
GGCGAGATCG GCGAGATCGT CGTCCACGGC GGTCAGGTGA TGCAGGGCTA CTGGAACAAC
CCGCAGGCCA ATGCGGAATC CTTCATCGAA ATCGCCGGCA AGCGCTTTCT ACGCACCGGC
GACCTCGGTT TCATGGATGA AGAAGGCTAT TTCTTCATGC GCGACCGCCT CAAGCGCATG
ATCAACGCGT CCGGCTTCAA GGTCTGGCCG GCCGAGGTGG AAAACCTGCT CTACGGCCAC
CCGGCCATCC ACGAGGCCTG CGTGATCGCC GCGCGCGATG AGCATCGCGG CGAAACGGTC
AAGGCCGTGG TGGCGCTGCG CCCCGAATCG CGCGGCACGC CGGAGGCCGA TGCGGAACGC
ATCATGGCCT GGTGCCGCGA GCGTCTGGCG GCCTACAAGG TGCCGCGCAT CGTCGAGTTC
GTGGACGCGC TGCCCAAATC GGCCACCGGC AAGATCCTGT GGCGCGCGCT GCAGGAAGAC
GCCATGCGGG CATAG
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| Protein sequence | MKSASTSQPY RSPAWPAGLP GTLHVPQTSL FHNLEVAARR YPGKTAIQYF GTAITYAELL
DDVERMAGYL QQSCGIQPGD RVVLYSQNAP QFIVAYYAIL RAEAVVVPAN PMWLEAELEH
VVADSGAVAA FCGSELYERV ASLHGKALRH VITYHYAGML RDDGGLPVPA WLREPAPASR
AAPGGAMPVD WDTARNAGQR PRAHEAGYNT LCMLAYTSGT TGNPKGCMHT HGTMMSSAVG
SQVWRSSSPE SVVLAVAPMF HLLGMQNCMH SPIYLGATVV LMPRWDRALA ADLIERYRVS
AWGAPPAMLV DFFAQPDVAR RDLSSLAFLG GGGAAMPDAV ANMLQERFGL PYVEAYGMTE
TASFLLSNPR QKPKRECLGI ATFGVDARVV DPESLAELPQ GEIGEIVVHG GQVMQGYWNN
PQANAESFIE IAGKRFLRTG DLGFMDEEGY FFMRDRLKRM INASGFKVWP AEVENLLYGH
PAIHEACVIA ARDEHRGETV KAVVALRPES RGTPEADAER IMAWCRERLA AYKVPRIVEF
VDALPKSATG KILWRALQED AMRA
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