| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4473 |
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| Symbol | tnpR |
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| ID | 4041332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 1071617 |
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| End bp | 1072177 |
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| Gene Length | 561 bp |
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| Protein Length | 186 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637979895 |
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| Product | serine-based site-specific recombinase activity TnpR |
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| Protein accession | YP_586607 |
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| Protein GI | 94313398 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1961] Site-specific recombinases, DNA invertase Pin homologs |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.0992302 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00348712 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | TTGCACGGTC AGCGCATCGG TTACGTCCGC GTCAGCAGCT TCGACCAGAA CCCAGAACGG
CAGCTCGAAC AGATCCAGGT GGATAAAGTG TTCACCGACA AGGCGTCGGG CAAGGACACA
CGGCGGCCCG AACTGGAACG GCTGCTCGCC TTCGTGCGCG AAGGCGACAC GGTCGTGGTG
CACAGCATGG ATCGTCTGGC GCGCAACCTC GACGACCTGC GCCGCCTGGT GCAGGGCCTC
ACCCAGCGCG GCGTACGCAT CGAGTTCCTT AAGGAGCATT TGACCTTCAC CGGCGAGGAC
TCGCCGATGG CGAACCTGAT GCTGTCGGTA ATGGGCGCGT TCGCCGAGTT CGAACGCGCC
TTGATCCGCG AGCGGCAGCG CGAGGGCATC GCGCTCGCCA AGCAGCGCGG GGCCTACCGT
GGCAGGAAGA AATCCCTGTC GTCTGAGCGT ATTGCCGAAC TGCGCCAACG TGTCGAGGCT
GGCGAGCAAA AGACCAAGCT GGCTCGTGAA TTCGGAATCA GTCGCGAAAC CCTGTATCAA
TACTTGAGAA CGGATCAGTA A
|
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| Protein sequence | MHGQRIGYVR VSSFDQNPER QLEQIQVDKV FTDKASGKDT RRPELERLLA FVREGDTVVV
HSMDRLARNL DDLRRLVQGL TQRGVRIEFL KEHLTFTGED SPMANLMLSV MGAFAEFERA
LIRERQREGI ALAKQRGAYR GRKKSLSSER IAELRQRVEA GEQKTKLARE FGISRETLYQ
YLRTDQ
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