| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4454 |
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| Symbol | fadD |
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| ID | 4041313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 1049674 |
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| End bp | 1051341 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637979876 |
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| Product | long-chain-fatty-acid-CoA ligase |
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| Protein accession | YP_586588 |
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| Protein GI | 94313379 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.100007 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCCCT ATGACCGCAA GCCCTGGCTG TCGAGCTACG AGCCGGGCAA GCCCCACGCG
ATCACGCCCG AGTTCACCGA CGCGCTGAGC CTGTTCCGTG CCGCGGTAGC GCGCGCGCCG
TCGCTGCCAG CCATTCTCTA CTTCGACGGC AGCCTGAGCT ACGCCGAACT CGACACGCAA
TCCGACGCGC TCGCCTGCGC GTGGCAAGAC CGCGGCATCA CGCGCGGAGA ACGCGTGGCC
ATTTACCTGC AGAACATCCC GCAGTTCGTC ATCGCTCTGG TGGCGACGTG GAAGCTGGGC
GCCATTGCCG TGCCCGTCAA CCCGATGAAC CGCGCGCGCG AACTGCGCGT GATCCTGGCG
GATTCGGGCG CTCGCCTGCT GGTTTGCTCC GAGACTCTGT ACGTCGATAT CGTCCGCCCC
CTGCTTGCCG AAGAAGCCAA TGCGGAAAAC GGCGTGCTGC CTCTGGTGAT GACGACATCC
GAACTGGAGT ACCAACGGCG CCACGACCCA CGGCTGTTCG CCAATACGAG CCGACAGGAG
ACACCGGGCG CGGAATCCCT GTCGGCAGTG ATCGCAGCCA ACGCCGGCCG CCATCCTCCG
CCAGCGGCGC TGGGGCCGAA CGACATCGCC ATGCTGGTGT ACACCTCCGG CACCACCGGC
GTGCCCAAGG GCGCGATGAA CACCCACGGC AACGTAGCCT TCAACGCCCA GGTCTACCGC
GACTGGATCA CGCTGGGCGA AGGCGAGCCC ATCCTCGGCG TCGCGCCCCT GTTTCATATC
ACCGGGCTGA TCGGCCATAT CGGCGCCGCC TTCATGTGCG CCGCCCCGCT GGTGCTGGCC
TGTCGCTTCG AACCGGGCGT GATGCTCGAC ACGCTGCGCG AACATCGCCC CGCCTTCACC
ATCGGCGCCA TCACCGTGTT CATCGCGCTG ATGAACCACC CGAACGCCAC GCGCGATTGC
TTCGCGTCGC TGACCAAGAT CTACTCCGGC GGCGCGCCGA TTCCGCCCAG CGTGGTGGAG
GCCTTTCGCG AGCGCTTCGG TCACTACATC CACAACGGCT ACGGCCTGAC CGAGACCAAC
TCGCCAACGC ACGTGGTGCC GCGCGGGGTC GAGGCGCCTG TGGACCCGGC CTCCGGCACC
CTTGCCGTGG GCGTGCCGGC CTACAACGTC GAGTCCTATA TTGGCGACGA CGAAGGCAAG
CCGATGGCGG TTGGCGAAGT CGGCGAGATC ATTTCGCGTG GGCCGATGAT CGTGCCGGGA
TACTGGAACA AGCCGCAGGA GAGCGCCAAG GCCATCGTCG ATGGTTACTT CCGCACGGGG
GATGTCGGGT TCATGGACGA ACGCGGCTGG TTCTACCTCG TGGACCGCAA GAAGGACATG
ATCAACGCCA GCGGCTACAA GGTCTGGCCA CGCGAGGTGG AGGACGTGCT GTACACCCAT
CCCGCCGTGC GGGAGGCCGC CGTGGTTGGC GTACCTGATG CCTACCGTGG CGAGACGGTG
AAAGCCGTGG TCAGCCTCAA GCCCGGGACG AACGTCACGC CGGAAGAACT GGCGGAGTAC
TGCAAGGCCC GGATGGCGGC GTACAAGTAT CCCCGCGTGG TGATGATCAT GGACGAGCTT
CCCAAGACCG TTACCGGGAA GATCTTGCGA CGGGAGTTGC GGGGGTAA
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| Protein sequence | MTPYDRKPWL SSYEPGKPHA ITPEFTDALS LFRAAVARAP SLPAILYFDG SLSYAELDTQ
SDALACAWQD RGITRGERVA IYLQNIPQFV IALVATWKLG AIAVPVNPMN RARELRVILA
DSGARLLVCS ETLYVDIVRP LLAEEANAEN GVLPLVMTTS ELEYQRRHDP RLFANTSRQE
TPGAESLSAV IAANAGRHPP PAALGPNDIA MLVYTSGTTG VPKGAMNTHG NVAFNAQVYR
DWITLGEGEP ILGVAPLFHI TGLIGHIGAA FMCAAPLVLA CRFEPGVMLD TLREHRPAFT
IGAITVFIAL MNHPNATRDC FASLTKIYSG GAPIPPSVVE AFRERFGHYI HNGYGLTETN
SPTHVVPRGV EAPVDPASGT LAVGVPAYNV ESYIGDDEGK PMAVGEVGEI ISRGPMIVPG
YWNKPQESAK AIVDGYFRTG DVGFMDERGW FYLVDRKKDM INASGYKVWP REVEDVLYTH
PAVREAAVVG VPDAYRGETV KAVVSLKPGT NVTPEELAEY CKARMAAYKY PRVVMIMDEL
PKTVTGKILR RELRG
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