Gene Rmet_4292 details

Gene Information

• Locus tag: Rmet_4292
• Symbol: prpR
• ID: 4041150
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cupriavidus metallidurans CH34
• Kingdom: Bacteria
• Replicon accession: NC_007974
• Strand: +
• Start bp: 883485
• End bp: 885422
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637979714
• Product: transcriptional regulator
• Protein accession: YP_586427
• Protein GI: 94313218
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
• TIGRFAM ID: [TIGR02329] propionate catabolism operon regulatory protein PrpR

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.964315
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.073414
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCAACGC TCATTTCACA TCCAAACCAG CTCCGCCCGG GCATCGCGCT GGTCAGCATC 
AGCCGGATGA GTACGCTGTG TGAGACCGTC GCGCCTCGCT ACAACGAGCT GGCGCGTTTC 
TTCTCGATTC GCGCGGGCTA CGGGGCTGCC GTGACCGCCC TCCAGGCGTA CGTCGATGCA 
GGCACGGTTG ACGTCGTGCT GGCGGCCGGC TCGAACGGCG CGTATCTGCG TGACAATCTC 
AGTGTGCCCG TGGTGATGGT AAAGGTGAAT GGCTTCGACG TGCTGAACGC TATCACGCAG 
GCCATCACAG CGTGGCCGGG TGAGGCCATC GGTTTGGTGC TGCACGATTC GGTGTCGAGG 
GAACTGGCCA ACCTCAGCGG CTGGCTGAAT GTTGCATTGA AACAGCGCGC ATACCGTTCG 
ATCGACGAGG TGCGTGCGGC CGTGGATACG CTTGCGGCAG AAGGCTGCAC CGTCATCATT 
GGTCCTGGCA TGGCATGCGA TCTGGCGCTG CAGGCGGGAT TGCAATGCGT ATTTCTCTAT 
TCCATTGGCG CTGTGGAGGA AGCGTTCGAG CGCTCCATTG AGTTGGCACG CATGAGTCGC 
CAGAAGGAAT CAAAGCGCGT GCGACTCAAC ACCATCGTCG CGCATTTGCG CGACGGCGTT 
GCGGCATTCG ACGAGGGTGG GCAGCTTGAG GTGGTGAATC CTGCGATGTT GGATCTGCTC 
GGCATGGACC GCTCCCGCGA TGTGGCGTCA CAGCTCCTGG GGGCGGTCGG CCCGCACCTA 
CGCGAAACAC TCGATGCCAA TTCGCCAAGC AACGAGCGCA TCGAACAGAT CGGCGGTCGC 
TCGCTGATTG TCAACTGCGT GCCAATCGTT GAGCATGGCT CACGCTCGGG AGCGGTGGTC 
ACTGTACAGG ACACACTAAT CGCACAGCGC ATTGACCGCT CGTTGCGAAC CAATCAGCGG 
CCGAAGCATC TGGTGGCGCG GCATAACCTG GCTGATCTGA TCGGCGGCTC TCCGGAGCTT 
GAACGCGTGC GGTGGCTAGC GCGAGCCAGC GCCGCGCACG ACGCTACCGT GCTGCTCACA 
GGCGAAAGCG GCACTGGCAA GGAACTGGTT GCTCAAGGTA TTCACAATGC CAGCCGTCGG 
CGTGGCAACC CATTCGTCGC GTTCAATTGT GCGGCACTGC CGGAAGGTTT GATAGAAAGC 
GAACTGTTTG GCCACGAAGA GGGCGCCTTC ACCGGCGCAC GGCGTGGTGG AAAGCCGGGC 
CTCTTCGAGG TCGCGCATAC GGGGACCATT TTTCTCGATG AGATCGGTGA GATGCCGGCC 
GCGTTGCAGA GCCGCCTGCT ACGTGTATTG CAGGAACGCG AAGTGATGAA GCTCGGCTCT 
GGGCGCGCAA CGCCAATCGA TGTCCGTGTC ATCGCCGCGA CGCATCGTAA TCTGCGCGAG 
TTGGTCAAGC GCGGCACATT TCGCGCCGAC CTGTATTTCC GGCTCAATCT GCTACAGATC 
GAACTGCCGC CCTTGCGTGA GCGGCGCAGT GATATACCCG GCCTAGCGCA GCATCTGCTC 
GCACGGAGTG CAGCAAAGTA CCACCTGCCA GCCACCGTCA CGAAGCACAT TCTGGAGTTC 
CTCTCGCCGC TCTTCGAGCT TTACACATGG CCCGGAAACG TACGGGAGCT TGAAAACCTC 
GTAGCGCGCG CGGCGATCTA TCTGAGCGAT GGTTCAGGCA GTGCGCGGGA AGACCTGCGG 
GCCATGTTTC CCGAGTTTGG AGAGATGCAA TCGCTGCCTG TTGCAGCGGA CAGGCACAAG 
GTTACCGATG CGCCGACTGG GACCGTGACT CGGGACGACA TCATGCGAGT CCTGCAGAAA 
AACGGTGGCA ATCGCGCCGC TGCGAGTCGT ACCTTGGGGA TCGGACGAAC GACGCTTTGG 
AGGTTAATGA AGGAGTAA 

 

Protein sequence

MSTLISHPNQ LRPGIALVSI SRMSTLCETV APRYNELARF FSIRAGYGAA VTALQAYVDA 
GTVDVVLAAG SNGAYLRDNL SVPVVMVKVN GFDVLNAITQ AITAWPGEAI GLVLHDSVSR 
ELANLSGWLN VALKQRAYRS IDEVRAAVDT LAAEGCTVII GPGMACDLAL QAGLQCVFLY 
SIGAVEEAFE RSIELARMSR QKESKRVRLN TIVAHLRDGV AAFDEGGQLE VVNPAMLDLL 
GMDRSRDVAS QLLGAVGPHL RETLDANSPS NERIEQIGGR SLIVNCVPIV EHGSRSGAVV 
TVQDTLIAQR IDRSLRTNQR PKHLVARHNL ADLIGGSPEL ERVRWLARAS AAHDATVLLT 
GESGTGKELV AQGIHNASRR RGNPFVAFNC AALPEGLIES ELFGHEEGAF TGARRGGKPG 
LFEVAHTGTI FLDEIGEMPA ALQSRLLRVL QEREVMKLGS GRATPIDVRV IAATHRNLRE 
LVKRGTFRAD LYFRLNLLQI ELPPLRERRS DIPGLAQHLL ARSAAKYHLP ATVTKHILEF 
LSPLFELYTW PGNVRELENL VARAAIYLSD GSGSAREDLR AMFPEFGEMQ SLPVAADRHK 
VTDAPTGTVT RDDIMRVLQK NGGNRAAASR TLGIGRTTLW RLMKE