Gene Rmet_4255 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_4255 
Symbol 
ID4041113 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp844245 
End bp848501 
Gene Length4257 bp 
Protein Length1418 aa 
Translation table11 
GC content64% 
IMG OID637979677 
ProductPAS/PAC sensor, hybrid histidine kinase 
Protein accessionYP_586390 
Protein GI94313181 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.377123 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCGCAGC AGCCCATTGC TACCACGGCG CAAACGATAC GGGTTGGGGT AGTGCAGAAC 
GACTGGCCGC CGTTTGCCAT CGTGCAAGAC GGACAGGTGA GCGGCATCGG TGTCGACTTC
CTGCGCGCGG CGCTTGGCGA CCGCCCCGTG CGCATTGTCA CGACCACGTT TGCCAGTATG
CCTGCCCTGC TGGCCGCCGC GTGCGCCAAC CAGGTGGACG TGGTGCTGAA CGTTGGCGAG
ACTGCCGAGC GCGCGCGTTG CCTGCGCTTT TCCGAGGCCT ACTTCGATGC CACTGCCGCA
ATCGTCGGCC GCGCAGGGGC AGCGGGGCAG GATGCCGTCG CATTGGAGCA GGCACGGATT
GCGGTGGAGC CGGGCTCTTT CATGGACGAG CGGCTTCGCG CACGGTTCCC GAATGCGCGG
TTTGTGCCCG TGAAGGACGC TGAAGGCGGG TTGCGTGCCG TACGCGACAA CCAGGCGGAT
TACTACCCCA CGCGGCAGCC AGTGGCGGAC TATTACTTGG GACGGCCCGA GTACAAAGGC
CTGGCCGTTC AGGCAGGCTA CCGGGAGCCC GGTGGCGGCC TGCATTTCGC GTTCAGTCCG
GCCGCCGCCG CCCTACAGAC CACCGTCAAT CAGGGGCTCG CCACGATGCC ACAAGACGCG
CGGCGCGCCA TTATCGGTCG TTGGGTGACG CCTCCGATCG TAGCGTCGTC GCCTGCAGGA
GAGTTCTTTC TGACGCCGGA GGAGCGGGCG TTTCTGCAAT CGCTGCCCGT GCTGAAGGTG
GCATTCGACG CGGGGTCGGC ACCCTATAGT TACGTCGACG ACAGAGGACG ACCCGGCGGC
ATGGCGGCTG ACTACCTGTC ATATCTGGGT CGCACGCTCG GCGTACGGTT CCAGCGTGAG
CGTGCCGCAC CCTTTGCGCA GACCGTGGAA GCGCTGCGGC AAGGCAAGCT GGACCTGATG
GCCGTCGCCG TGGCCGAGGA TCCAGCGCTG GCTGGCCTGC CGGTGACCCG GCCCTATGCC
TCCTTCCCGA TGGTCATCGT GGGGCGCCAG CTGGATGTGG CGGTCGAAGG CCTCAACGAC
CTGACTGGCA AGCGTGTGGT CGTTTGTGAG GCGAGTGGTG TGGAGGGCCT GCTCAGGGCA
GCCGTCCCGC ATCTGCAGTT GTCCGTCGTA AGTTCCGTGC ATGCCGGCAT GGAGGCGGTT
GCCAATGGGA AAGCCGATGC ATATGTGGAC GATCTGGCTA CGGTGGACGT GGAGCTGCAA
CGTTATTTCG CGGGGACGCT GCGCATCATA GGTTCCGGCA GACAAACGCT GGACATGGGC
TTTGGCTTGT CCCCCGAGCT GGGAGCACGG CTGCTGCCGC TCATTGACCG TGCCATGGAA
TACATGCCGC AAGTCGAGCG CCTCGCGATC CAGAGCCGTT ACATCGCCGC CAGCTATGCT
CTGGAGCCCT CATGGCAGCA GGTCCTGCGA CGCATCGCCC CATACCTGGT CGCCGTCATC
GTTATTATCG GGATCCTGCT GCGCTCGCAG TATCGATTGC GACGGGAGGC GTCCGCCAGG
CGACTCGCCA AACAGCAGCT TCAGGCGCAA CTGGATTTCC AGCGCACGTT GATCGACGCC
GTCCCGATTC CGATCACCGT CAAGGATGCC CAAGGGCGAT ACGTTGAAGT CAATGCCGCC
TTCCAGTCGC GGGCGGGGAT GACTAGACAG CAGATGGTTG GTCACTTGCC CACAGAGCTG
AATGTGCCGG GCAACCGCGC AGCCGAAGCG TTGGAAGCGG GCTCCCGGCG AGCCCTGGAG
ACCCAACAGC TGCAGCAGTT TGCGGTGGAC TACGTGGACG CCGATGGCAA GCAACGCTAT
TACCTGTGCT GGGCGCAACC CATCAAGAGA GTCGGGCCGG AGTTCGCCGG GGTCATCTCG
GCCGCGGTGG ATGTGACGGA GATTCGCAAC GCCGAAGCCA AGGCCCAAGC TGCCGAGGCC
ATGCTTGTGG ACGCGACTCG CCATTTGCCC GCCACGGCTT TCCGAATGCG CGAGCGCGAC
GGTGTCTTTT CGTATGAGTG GGTGAGCGGC AATGCGCAGC AACTGCTCGG TCGCTCATCA
GAATCGTTGA TTGGTCCGGC TAATCCGCTG CTGGGCATGG CCAACGTGGA GGACCGCATC
GCGGCGTTGG CCGCAGCCGA AGAGGCCAAA ACCACGGGGC GGCCTTTGAG CGCGGACATG
CGTCTTCTGA TCCGTGGACA AACACGCTGG ATCCGCATCC ATGCCGTGCC TAAGACAGAG
CCGGATGGCG GCGTCCTGTG GCACGGCTAC TATGTGGACC TCACGGAAGA GCGCGAGCGT
GCCAACGCAC TGGCGCAGGC AAAGGATGCG GCCGAAGCGG CATCGCGAGC CAAGGACAGT
TTTCTGGCCA TGATGAGCCA TGAGATCCGC ACGCCAATGA ATGGCATTCT CGGCCTGATC
GAACTGCTGC AAAGAACGCC GCTGACGGCC GAGCAGCAGC GCATGGTCGC GTTGGCCGGC
GAGTCTGGCC AGGCACTCGG ACGGATACTG GACGACATTC TGGACTACGC CAAACTCGAG
GCCGGGCGGC TTGCCATCCT GCGAGCGCCG GTGGATCTTC GGGAACTCTT CGACGGCGTG
CTCGGCTCGC TGTTGCCGCA AGCTTTCCAG AAGGGCTTGC GTCTGAAGCA AAGGGTGAGC
GCGGAGGTGG CGGCCATCGT GCAGGCCGAT GGCATCCGTC TGCGCCAGAT TCTGTTCAAT
CTGCTAGGTA ATGCCATCAA GTTTACCGAT CACGGCAGCG TGATGTTGCG CGCAACCATG
GAGCCAGGTG CTACCGGGTT GCCAATGCTG GTCGTGGTCG TGGAAGACAC TGGAATCGGT
ATTGCCAGGA CGGATCTCGC TCGCCTGTTC GCCCCGTTCA TGCAAAGCGA GCGCAGTACC
GCACGCCGAT TCGGTGGAAC CGGGCTGGGG CTAACCATTG TCAGGACGCT GGCAGAGCTC
ATGGACGGCG AGATAACCCT GAAGAGCGAG GCGGGGGTGG GTACGACGGC GGTACTCCGG
GTGCCATGCG AAGTCGTCAG CCAGGGCTAT GATTTGCCGA ACCTCCGCGG CAGGGCGCTA
TCCGTTCTTG TCAGCGATGA CAGCAGGCGT GCGGCCCTGA TCGCCTACGG CGAGGCCGCC
GGCATGCGCT GCGTCAGCCC GGAGGATGAG ACTCCGGACG ATGGCATCGC AATTACCGAT
CGGATGGAGC GAGCCGGGCG AAAGGGCCAG TTTGCGATTC ACCTGACCGA TGAATTGCTG
CCATTGGGTT ACAGCCAGGA TGAGTCTGGC GTGTCGCTCG GCAGCAATCC GTTGCGATGG
ACGGCTTTTG TGGGAGCACT GGAAGCGCTG CTCAAGGGCA TTGCACCAGC CTCACCACAG
GCCTCGCGGG CGGGAGAGGG GAAAGCAGAC GATCTGGTGC CCCAGGGCGC CAGGATCCTT
GTCGTCGAGG ACCATCCCAT CAACCGGGAA GTTATCGGGC AGCAATTGCG TCTGCTGGGC
TACCGCAGCA CGGTGTGCAC CAACGGGCAG GAAGCGGTAA CGGCGCTGCG GGCCGATACG
TATGATCTGG TGCTGACTGA TTGCCACATG CCGGTCATGG ACGGATTTGA CTTGACTCGG
TCGATCCGGG CGAGTGATCG GCCGTCCGTC CGAGCGCTGC CCGTGGTGGG ACTGACTGCA
ACAGTCGCCA GGGAAGAGCA TGTCCTGTGC ATGGAAGTGG GCATGAACGC GTTCCTGGTG
AAGCCGGCGA CATTGGCATC GCTACAGCAG ACGATCGAGA CCGCATTGCA AGGAGGTCCG
GAGGCACCGT CGCCCAAGAC GGAGGTTCGA TCTCGGGAAG CATCACCGGC CCGTCGGACG
CCCGAATCCG GCGGATTCCG TCCGGAATGC ATCGATACCG TCGGGCTGCG GTCCCAACTG
GAGCCCATGT TGGCGGAGCG CGACGTGCGC CAGATCTTCT TGCGATCCCT GGAACAAGAC
CGCGACGCCT TGCGTGCGCA GCTGGCGGCG CCGACGCCCG CAGGACTGGG CAAGTGGTGT
CATCGTGCCG GTGGCGCGAT TTCGGTGATG GAGCAGCCAT ACCTGCACGA GTTGCTCGAT
CGGCTGGATG GTCTGCTGGA GACCGGCTCC CCGGCTCAAA TCCAGTCGGC GGGCGCTTCG
CTGTCGGCGA TGTATGACTA CCTGATCGAT TGGCTGGAGA AGCTGGATGT TGCGTGA
 
Protein sequence
MAQQPIATTA QTIRVGVVQN DWPPFAIVQD GQVSGIGVDF LRAALGDRPV RIVTTTFASM 
PALLAAACAN QVDVVLNVGE TAERARCLRF SEAYFDATAA IVGRAGAAGQ DAVALEQARI
AVEPGSFMDE RLRARFPNAR FVPVKDAEGG LRAVRDNQAD YYPTRQPVAD YYLGRPEYKG
LAVQAGYREP GGGLHFAFSP AAAALQTTVN QGLATMPQDA RRAIIGRWVT PPIVASSPAG
EFFLTPEERA FLQSLPVLKV AFDAGSAPYS YVDDRGRPGG MAADYLSYLG RTLGVRFQRE
RAAPFAQTVE ALRQGKLDLM AVAVAEDPAL AGLPVTRPYA SFPMVIVGRQ LDVAVEGLND
LTGKRVVVCE ASGVEGLLRA AVPHLQLSVV SSVHAGMEAV ANGKADAYVD DLATVDVELQ
RYFAGTLRII GSGRQTLDMG FGLSPELGAR LLPLIDRAME YMPQVERLAI QSRYIAASYA
LEPSWQQVLR RIAPYLVAVI VIIGILLRSQ YRLRREASAR RLAKQQLQAQ LDFQRTLIDA
VPIPITVKDA QGRYVEVNAA FQSRAGMTRQ QMVGHLPTEL NVPGNRAAEA LEAGSRRALE
TQQLQQFAVD YVDADGKQRY YLCWAQPIKR VGPEFAGVIS AAVDVTEIRN AEAKAQAAEA
MLVDATRHLP ATAFRMRERD GVFSYEWVSG NAQQLLGRSS ESLIGPANPL LGMANVEDRI
AALAAAEEAK TTGRPLSADM RLLIRGQTRW IRIHAVPKTE PDGGVLWHGY YVDLTEERER
ANALAQAKDA AEAASRAKDS FLAMMSHEIR TPMNGILGLI ELLQRTPLTA EQQRMVALAG
ESGQALGRIL DDILDYAKLE AGRLAILRAP VDLRELFDGV LGSLLPQAFQ KGLRLKQRVS
AEVAAIVQAD GIRLRQILFN LLGNAIKFTD HGSVMLRATM EPGATGLPML VVVVEDTGIG
IARTDLARLF APFMQSERST ARRFGGTGLG LTIVRTLAEL MDGEITLKSE AGVGTTAVLR
VPCEVVSQGY DLPNLRGRAL SVLVSDDSRR AALIAYGEAA GMRCVSPEDE TPDDGIAITD
RMERAGRKGQ FAIHLTDELL PLGYSQDESG VSLGSNPLRW TAFVGALEAL LKGIAPASPQ
ASRAGEGKAD DLVPQGARIL VVEDHPINRE VIGQQLRLLG YRSTVCTNGQ EAVTALRADT
YDLVLTDCHM PVMDGFDLTR SIRASDRPSV RALPVVGLTA TVAREEHVLC MEVGMNAFLV
KPATLASLQQ TIETALQGGP EAPSPKTEVR SREASPARRT PESGGFRPEC IDTVGLRSQL
EPMLAERDVR QIFLRSLEQD RDALRAQLAA PTPAGLGKWC HRAGGAISVM EQPYLHELLD
RLDGLLETGS PAQIQSAGAS LSAMYDYLID WLEKLDVA