Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_4255 |
Symbol | |
ID | 4041113 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007974 |
Strand | + |
Start bp | 844245 |
End bp | 848501 |
Gene Length | 4257 bp |
Protein Length | 1418 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637979677 |
Product | PAS/PAC sensor, hybrid histidine kinase |
Protein accession | YP_586390 |
Protein GI | 94313181 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.377123 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCGCAGC AGCCCATTGC TACCACGGCG CAAACGATAC GGGTTGGGGT AGTGCAGAAC GACTGGCCGC CGTTTGCCAT CGTGCAAGAC GGACAGGTGA GCGGCATCGG TGTCGACTTC CTGCGCGCGG CGCTTGGCGA CCGCCCCGTG CGCATTGTCA CGACCACGTT TGCCAGTATG CCTGCCCTGC TGGCCGCCGC GTGCGCCAAC CAGGTGGACG TGGTGCTGAA CGTTGGCGAG ACTGCCGAGC GCGCGCGTTG CCTGCGCTTT TCCGAGGCCT ACTTCGATGC CACTGCCGCA ATCGTCGGCC GCGCAGGGGC AGCGGGGCAG GATGCCGTCG CATTGGAGCA GGCACGGATT GCGGTGGAGC CGGGCTCTTT CATGGACGAG CGGCTTCGCG CACGGTTCCC GAATGCGCGG TTTGTGCCCG TGAAGGACGC TGAAGGCGGG TTGCGTGCCG TACGCGACAA CCAGGCGGAT TACTACCCCA CGCGGCAGCC AGTGGCGGAC TATTACTTGG GACGGCCCGA GTACAAAGGC CTGGCCGTTC AGGCAGGCTA CCGGGAGCCC GGTGGCGGCC TGCATTTCGC GTTCAGTCCG GCCGCCGCCG CCCTACAGAC CACCGTCAAT CAGGGGCTCG CCACGATGCC ACAAGACGCG CGGCGCGCCA TTATCGGTCG TTGGGTGACG CCTCCGATCG TAGCGTCGTC GCCTGCAGGA GAGTTCTTTC TGACGCCGGA GGAGCGGGCG TTTCTGCAAT CGCTGCCCGT GCTGAAGGTG GCATTCGACG CGGGGTCGGC ACCCTATAGT TACGTCGACG ACAGAGGACG ACCCGGCGGC ATGGCGGCTG ACTACCTGTC ATATCTGGGT CGCACGCTCG GCGTACGGTT CCAGCGTGAG CGTGCCGCAC CCTTTGCGCA GACCGTGGAA GCGCTGCGGC AAGGCAAGCT GGACCTGATG GCCGTCGCCG TGGCCGAGGA TCCAGCGCTG GCTGGCCTGC CGGTGACCCG GCCCTATGCC TCCTTCCCGA TGGTCATCGT GGGGCGCCAG CTGGATGTGG CGGTCGAAGG CCTCAACGAC CTGACTGGCA AGCGTGTGGT CGTTTGTGAG GCGAGTGGTG TGGAGGGCCT GCTCAGGGCA GCCGTCCCGC ATCTGCAGTT GTCCGTCGTA AGTTCCGTGC ATGCCGGCAT GGAGGCGGTT GCCAATGGGA AAGCCGATGC ATATGTGGAC GATCTGGCTA CGGTGGACGT GGAGCTGCAA CGTTATTTCG CGGGGACGCT GCGCATCATA GGTTCCGGCA GACAAACGCT GGACATGGGC TTTGGCTTGT CCCCCGAGCT GGGAGCACGG CTGCTGCCGC TCATTGACCG TGCCATGGAA TACATGCCGC AAGTCGAGCG CCTCGCGATC CAGAGCCGTT ACATCGCCGC CAGCTATGCT CTGGAGCCCT CATGGCAGCA GGTCCTGCGA CGCATCGCCC CATACCTGGT CGCCGTCATC GTTATTATCG GGATCCTGCT GCGCTCGCAG TATCGATTGC GACGGGAGGC GTCCGCCAGG CGACTCGCCA AACAGCAGCT TCAGGCGCAA CTGGATTTCC AGCGCACGTT GATCGACGCC GTCCCGATTC CGATCACCGT CAAGGATGCC CAAGGGCGAT ACGTTGAAGT CAATGCCGCC TTCCAGTCGC GGGCGGGGAT GACTAGACAG CAGATGGTTG GTCACTTGCC CACAGAGCTG AATGTGCCGG GCAACCGCGC AGCCGAAGCG TTGGAAGCGG GCTCCCGGCG AGCCCTGGAG ACCCAACAGC TGCAGCAGTT TGCGGTGGAC TACGTGGACG CCGATGGCAA GCAACGCTAT TACCTGTGCT GGGCGCAACC CATCAAGAGA GTCGGGCCGG AGTTCGCCGG GGTCATCTCG GCCGCGGTGG ATGTGACGGA GATTCGCAAC GCCGAAGCCA AGGCCCAAGC TGCCGAGGCC ATGCTTGTGG ACGCGACTCG CCATTTGCCC GCCACGGCTT TCCGAATGCG CGAGCGCGAC GGTGTCTTTT CGTATGAGTG GGTGAGCGGC AATGCGCAGC AACTGCTCGG TCGCTCATCA GAATCGTTGA TTGGTCCGGC TAATCCGCTG CTGGGCATGG CCAACGTGGA GGACCGCATC GCGGCGTTGG CCGCAGCCGA AGAGGCCAAA ACCACGGGGC GGCCTTTGAG CGCGGACATG CGTCTTCTGA TCCGTGGACA AACACGCTGG ATCCGCATCC ATGCCGTGCC TAAGACAGAG CCGGATGGCG GCGTCCTGTG GCACGGCTAC TATGTGGACC TCACGGAAGA GCGCGAGCGT GCCAACGCAC TGGCGCAGGC AAAGGATGCG GCCGAAGCGG CATCGCGAGC CAAGGACAGT TTTCTGGCCA TGATGAGCCA TGAGATCCGC ACGCCAATGA ATGGCATTCT CGGCCTGATC GAACTGCTGC AAAGAACGCC GCTGACGGCC GAGCAGCAGC GCATGGTCGC GTTGGCCGGC GAGTCTGGCC AGGCACTCGG ACGGATACTG GACGACATTC TGGACTACGC CAAACTCGAG GCCGGGCGGC TTGCCATCCT GCGAGCGCCG GTGGATCTTC GGGAACTCTT CGACGGCGTG CTCGGCTCGC TGTTGCCGCA AGCTTTCCAG AAGGGCTTGC GTCTGAAGCA AAGGGTGAGC GCGGAGGTGG CGGCCATCGT GCAGGCCGAT GGCATCCGTC TGCGCCAGAT TCTGTTCAAT CTGCTAGGTA ATGCCATCAA GTTTACCGAT CACGGCAGCG TGATGTTGCG CGCAACCATG GAGCCAGGTG CTACCGGGTT GCCAATGCTG GTCGTGGTCG TGGAAGACAC TGGAATCGGT ATTGCCAGGA CGGATCTCGC TCGCCTGTTC GCCCCGTTCA TGCAAAGCGA GCGCAGTACC GCACGCCGAT TCGGTGGAAC CGGGCTGGGG CTAACCATTG TCAGGACGCT GGCAGAGCTC ATGGACGGCG AGATAACCCT GAAGAGCGAG GCGGGGGTGG GTACGACGGC GGTACTCCGG GTGCCATGCG AAGTCGTCAG CCAGGGCTAT GATTTGCCGA ACCTCCGCGG CAGGGCGCTA TCCGTTCTTG TCAGCGATGA CAGCAGGCGT GCGGCCCTGA TCGCCTACGG CGAGGCCGCC GGCATGCGCT GCGTCAGCCC GGAGGATGAG ACTCCGGACG ATGGCATCGC AATTACCGAT CGGATGGAGC GAGCCGGGCG AAAGGGCCAG TTTGCGATTC ACCTGACCGA TGAATTGCTG CCATTGGGTT ACAGCCAGGA TGAGTCTGGC GTGTCGCTCG GCAGCAATCC GTTGCGATGG ACGGCTTTTG TGGGAGCACT GGAAGCGCTG CTCAAGGGCA TTGCACCAGC CTCACCACAG GCCTCGCGGG CGGGAGAGGG GAAAGCAGAC GATCTGGTGC CCCAGGGCGC CAGGATCCTT GTCGTCGAGG ACCATCCCAT CAACCGGGAA GTTATCGGGC AGCAATTGCG TCTGCTGGGC TACCGCAGCA CGGTGTGCAC CAACGGGCAG GAAGCGGTAA CGGCGCTGCG GGCCGATACG TATGATCTGG TGCTGACTGA TTGCCACATG CCGGTCATGG ACGGATTTGA CTTGACTCGG TCGATCCGGG CGAGTGATCG GCCGTCCGTC CGAGCGCTGC CCGTGGTGGG ACTGACTGCA ACAGTCGCCA GGGAAGAGCA TGTCCTGTGC ATGGAAGTGG GCATGAACGC GTTCCTGGTG AAGCCGGCGA CATTGGCATC GCTACAGCAG ACGATCGAGA CCGCATTGCA AGGAGGTCCG GAGGCACCGT CGCCCAAGAC GGAGGTTCGA TCTCGGGAAG CATCACCGGC CCGTCGGACG CCCGAATCCG GCGGATTCCG TCCGGAATGC ATCGATACCG TCGGGCTGCG GTCCCAACTG GAGCCCATGT TGGCGGAGCG CGACGTGCGC CAGATCTTCT TGCGATCCCT GGAACAAGAC CGCGACGCCT TGCGTGCGCA GCTGGCGGCG CCGACGCCCG CAGGACTGGG CAAGTGGTGT CATCGTGCCG GTGGCGCGAT TTCGGTGATG GAGCAGCCAT ACCTGCACGA GTTGCTCGAT CGGCTGGATG GTCTGCTGGA GACCGGCTCC CCGGCTCAAA TCCAGTCGGC GGGCGCTTCG CTGTCGGCGA TGTATGACTA CCTGATCGAT TGGCTGGAGA AGCTGGATGT TGCGTGA
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Protein sequence | MAQQPIATTA QTIRVGVVQN DWPPFAIVQD GQVSGIGVDF LRAALGDRPV RIVTTTFASM PALLAAACAN QVDVVLNVGE TAERARCLRF SEAYFDATAA IVGRAGAAGQ DAVALEQARI AVEPGSFMDE RLRARFPNAR FVPVKDAEGG LRAVRDNQAD YYPTRQPVAD YYLGRPEYKG LAVQAGYREP GGGLHFAFSP AAAALQTTVN QGLATMPQDA RRAIIGRWVT PPIVASSPAG EFFLTPEERA FLQSLPVLKV AFDAGSAPYS YVDDRGRPGG MAADYLSYLG RTLGVRFQRE RAAPFAQTVE ALRQGKLDLM AVAVAEDPAL AGLPVTRPYA SFPMVIVGRQ LDVAVEGLND LTGKRVVVCE ASGVEGLLRA AVPHLQLSVV SSVHAGMEAV ANGKADAYVD DLATVDVELQ RYFAGTLRII GSGRQTLDMG FGLSPELGAR LLPLIDRAME YMPQVERLAI QSRYIAASYA LEPSWQQVLR RIAPYLVAVI VIIGILLRSQ YRLRREASAR RLAKQQLQAQ LDFQRTLIDA VPIPITVKDA QGRYVEVNAA FQSRAGMTRQ QMVGHLPTEL NVPGNRAAEA LEAGSRRALE TQQLQQFAVD YVDADGKQRY YLCWAQPIKR VGPEFAGVIS AAVDVTEIRN AEAKAQAAEA MLVDATRHLP ATAFRMRERD GVFSYEWVSG NAQQLLGRSS ESLIGPANPL LGMANVEDRI AALAAAEEAK TTGRPLSADM RLLIRGQTRW IRIHAVPKTE PDGGVLWHGY YVDLTEERER ANALAQAKDA AEAASRAKDS FLAMMSHEIR TPMNGILGLI ELLQRTPLTA EQQRMVALAG ESGQALGRIL DDILDYAKLE AGRLAILRAP VDLRELFDGV LGSLLPQAFQ KGLRLKQRVS AEVAAIVQAD GIRLRQILFN LLGNAIKFTD HGSVMLRATM EPGATGLPML VVVVEDTGIG IARTDLARLF APFMQSERST ARRFGGTGLG LTIVRTLAEL MDGEITLKSE AGVGTTAVLR VPCEVVSQGY DLPNLRGRAL SVLVSDDSRR AALIAYGEAA GMRCVSPEDE TPDDGIAITD RMERAGRKGQ FAIHLTDELL PLGYSQDESG VSLGSNPLRW TAFVGALEAL LKGIAPASPQ ASRAGEGKAD DLVPQGARIL VVEDHPINRE VIGQQLRLLG YRSTVCTNGQ EAVTALRADT YDLVLTDCHM PVMDGFDLTR SIRASDRPSV RALPVVGLTA TVAREEHVLC MEVGMNAFLV KPATLASLQQ TIETALQGGP EAPSPKTEVR SREASPARRT PESGGFRPEC IDTVGLRSQL EPMLAERDVR QIFLRSLEQD RDALRAQLAA PTPAGLGKWC HRAGGAISVM EQPYLHELLD RLDGLLETGS PAQIQSAGAS LSAMYDYLID WLEKLDVA
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