Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_4016 |
Symbol | pcaD |
ID | 4040874 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007974 |
Strand | + |
Start bp | 586443 |
End bp | 587621 |
Gene Length | 1179 bp |
Protein Length | 392 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637979440 |
Product | 3-oxoadipate enol-lactonase |
Protein accession | YP_586153 |
Protein GI | 94312944 |
COG category | [R] General function prediction only [S] Function unknown |
COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit |
TIGRFAM ID | [TIGR02425] 4-carboxymuconolactone decarboxylase [TIGR02427] 3-oxoadipate enol-lactonase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.00993372 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCCTTACC TCGATCAAGC CGGCGCCCGG CTGTTCTACA CCGTCGACGG ACCGGAAGAC GCACCGGTCA TCGTTTTCTC GAACTCGCTC GGCACCGATC ACACGATGTG GCAGCCCCAG GCCGACGCGC TGGCTGGCCG TTTTCGCGTG GTGCGCTACG ACGTGCGCGG CCACGGCCGA TCCACTACGA CCGAGACTTC GCTGACCGTG GAGACATTGG GCCGCGACGT GCTGGCCATC CTCGATGCGC TTCACGTTGA CAAGGCCGTG TTCTGCGGGC TTTCGATGGG CGGTCTGACG GGCATGTGGC TCGGCGCGTA TGCGCCAGAA CGCTTCTCGA AGATCGTGCT GGCCAATACC GCGCCGAAGA TTGGCACGGC CGAATCCTGG AATACGCGCA TCGACGCGGT GATTCGCGAT GGCCTGGGCG GCATGGTCGA TGCATCGCTG GGCCGCTGGT TCACGCCGAC GTTCGTCGCC ACGTCCGGAC GCGCGCTCGA TGATCTGCGT GCCGTGCTGG CGGGGCTCGA TCCGCGTGGG TATGCGGCGA GTTGCGCCGC CGTGCGCGAT GCCGACCTGC GCGAGGCGGT CAAGACGATG CCGGTACCCG TGCTGGTGAT CGCCGGCAGC GACGATCCGT CGACCACCGC GGAAGAGGGC AGGGCACTGG CCGCAGCCAT TCCCGGGGCC ATCTATGTAG AGCTCCACGC CGCGCATCTC TCGAACCGCG AGCAGCCGGG GCGCTTTACT GCCGCGCTGC TTGACTTCAT CAACGGCCGC CTGCCGGTGA CGGATGATCA GGCGCGCTAC GATGCGGGCC TCGCCGTGCG CCGGGAAGTG CTTGGCAGCG CGCACGTCGA CCGTTCGCTG CAACGGCTGA CGCCGCTGAA CGAGGAATTC CAGAACCTGA TCACGCGCTA TGCCTGGGGC GAGATCTGGA CGCGTGAAGG GCTGCCACGT CATTCGCGCA GCTTGATCAC GATCGCGATG ATGGTGGCGC TGAACCGTTC CGAGGAACTG AAGCTGCACC TCCGTGCAGC CGCCAACAAT GGCGTCACGC GCGACGAGAT CAAGGAAGTC CTGTTGCAGA CCGCGATCTA TTGCGGTGTG CCGGCGGCCA ACTCGGCATT CCACATGGCC GGGGAAGTGT TTGCAGAATT GGATCGCGCA CGCGGTTGA
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Protein sequence | MPYLDQAGAR LFYTVDGPED APVIVFSNSL GTDHTMWQPQ ADALAGRFRV VRYDVRGHGR STTTETSLTV ETLGRDVLAI LDALHVDKAV FCGLSMGGLT GMWLGAYAPE RFSKIVLANT APKIGTAESW NTRIDAVIRD GLGGMVDASL GRWFTPTFVA TSGRALDDLR AVLAGLDPRG YAASCAAVRD ADLREAVKTM PVPVLVIAGS DDPSTTAEEG RALAAAIPGA IYVELHAAHL SNREQPGRFT AALLDFINGR LPVTDDQARY DAGLAVRREV LGSAHVDRSL QRLTPLNEEF QNLITRYAWG EIWTREGLPR HSRSLITIAM MVALNRSEEL KLHLRAAANN GVTRDEIKEV LLQTAIYCGV PAANSAFHMA GEVFAELDRA RG
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