Gene Rmet_4016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_4016 
SymbolpcaD 
ID4040874 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp586443 
End bp587621 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content66% 
IMG OID637979440 
Product3-oxoadipate enol-lactonase 
Protein accessionYP_586153 
Protein GI94312944 
COG category[R] General function prediction only
[S] Function unknown 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
[COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 
TIGRFAM ID[TIGR02425] 4-carboxymuconolactone decarboxylase
[TIGR02427] 3-oxoadipate enol-lactonase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.00993372 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCCTTACC TCGATCAAGC CGGCGCCCGG CTGTTCTACA CCGTCGACGG ACCGGAAGAC 
GCACCGGTCA TCGTTTTCTC GAACTCGCTC GGCACCGATC ACACGATGTG GCAGCCCCAG
GCCGACGCGC TGGCTGGCCG TTTTCGCGTG GTGCGCTACG ACGTGCGCGG CCACGGCCGA
TCCACTACGA CCGAGACTTC GCTGACCGTG GAGACATTGG GCCGCGACGT GCTGGCCATC
CTCGATGCGC TTCACGTTGA CAAGGCCGTG TTCTGCGGGC TTTCGATGGG CGGTCTGACG
GGCATGTGGC TCGGCGCGTA TGCGCCAGAA CGCTTCTCGA AGATCGTGCT GGCCAATACC
GCGCCGAAGA TTGGCACGGC CGAATCCTGG AATACGCGCA TCGACGCGGT GATTCGCGAT
GGCCTGGGCG GCATGGTCGA TGCATCGCTG GGCCGCTGGT TCACGCCGAC GTTCGTCGCC
ACGTCCGGAC GCGCGCTCGA TGATCTGCGT GCCGTGCTGG CGGGGCTCGA TCCGCGTGGG
TATGCGGCGA GTTGCGCCGC CGTGCGCGAT GCCGACCTGC GCGAGGCGGT CAAGACGATG
CCGGTACCCG TGCTGGTGAT CGCCGGCAGC GACGATCCGT CGACCACCGC GGAAGAGGGC
AGGGCACTGG CCGCAGCCAT TCCCGGGGCC ATCTATGTAG AGCTCCACGC CGCGCATCTC
TCGAACCGCG AGCAGCCGGG GCGCTTTACT GCCGCGCTGC TTGACTTCAT CAACGGCCGC
CTGCCGGTGA CGGATGATCA GGCGCGCTAC GATGCGGGCC TCGCCGTGCG CCGGGAAGTG
CTTGGCAGCG CGCACGTCGA CCGTTCGCTG CAACGGCTGA CGCCGCTGAA CGAGGAATTC
CAGAACCTGA TCACGCGCTA TGCCTGGGGC GAGATCTGGA CGCGTGAAGG GCTGCCACGT
CATTCGCGCA GCTTGATCAC GATCGCGATG ATGGTGGCGC TGAACCGTTC CGAGGAACTG
AAGCTGCACC TCCGTGCAGC CGCCAACAAT GGCGTCACGC GCGACGAGAT CAAGGAAGTC
CTGTTGCAGA CCGCGATCTA TTGCGGTGTG CCGGCGGCCA ACTCGGCATT CCACATGGCC
GGGGAAGTGT TTGCAGAATT GGATCGCGCA CGCGGTTGA
 
Protein sequence
MPYLDQAGAR LFYTVDGPED APVIVFSNSL GTDHTMWQPQ ADALAGRFRV VRYDVRGHGR 
STTTETSLTV ETLGRDVLAI LDALHVDKAV FCGLSMGGLT GMWLGAYAPE RFSKIVLANT
APKIGTAESW NTRIDAVIRD GLGGMVDASL GRWFTPTFVA TSGRALDDLR AVLAGLDPRG
YAASCAAVRD ADLREAVKTM PVPVLVIAGS DDPSTTAEEG RALAAAIPGA IYVELHAAHL
SNREQPGRFT AALLDFINGR LPVTDDQARY DAGLAVRREV LGSAHVDRSL QRLTPLNEEF
QNLITRYAWG EIWTREGLPR HSRSLITIAM MVALNRSEEL KLHLRAAANN GVTRDEIKEV
LLQTAIYCGV PAANSAFHMA GEVFAELDRA RG