Gene Rmet_3969 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_3969 
Symbol 
ID4040827 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp531721 
End bp534027 
Gene Length2307 bp 
Protein Length768 aa 
Translation table11 
GC content67% 
IMG OID637979393 
Productsignal transduction histidine kinase (cheA) 
Protein accessionYP_586106 
Protein GI94312897 
COG category[T] Signal transduction mechanisms
[K] Transcription
[N] Cell motility 
COG ID[COG0643] Chemotaxis protein histidine kinase and related kinases
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00140745 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.014071 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCCGG AACAGCTCCG TGATGCCTCG TTGCTGGACC TGTTCGCGCT CGAAGCCGAC 
GCGCAGGCCG ATGTGCTCAA TGCCGGCCTG CTGGCCCTGG AGCGCGATCC CACGGCAGCC
GTCCAGCTCG AGGCATGCAT GCGCGCCGCG CATTCGCTAA AAGGGGCCGC GCGCATCGTC
GGGCTCGAAG GTGGCGTGCG CGTTGCGCAT GTGATGGAGG ATTGCCTCGT CGCCGCGCAA
CGTGGCGGCC TTCTGCTGAG CGCCTCCCAT ATCGATGCAC TGCTGCAAGG CACTGACCTG
CTGCAGCGAA TCGGCCATCC GCCCGATGGC AACGCCAATT GGCCGGAGCT TGGCGGCAAG
GCAGAGATCG ACGCTTTCGT CGCCCGTCTC GAGGCGCTGC TCGATGGCGG CGCGGATGTG
GCGGCACTGG CAGCACCGAC AGTGTTGCCG CCGGCCGCCG AGCCCGCGCC GCCGGAGCCC
CCGTTACCCA CGGTCAATCA CCCGTCAACG AGCACCGTCG TCCCGGCGCA GCCACAGGAG
TACACCGGCA GCAACCAGGA ACGCATCCTG CGCGTCAATG CCGAACGGCT GGACCGGCTG
CTGGCGATGG CCGGCGAGTC GATGGTGGAG ACGCATTGGC TACGGCCGTT CGGAGTTGCG
ATCCAGCAGG CCAGGCGTCA ACAGATGCGC GTGATGCAGG CGCTCGATGG CGTTCAGGCG
CTGCTCGACA GCCCCGATAG CACCGTGCCA CGCCTGCGGG CGGCACTGAT GGAGACTCGC
CAACTGCTTG AGGACAGCCA CGGCCAACTC ACCCAGCGCG TGGAGGAATT CGACCAGTAC
GATCACCGCC AAAGTGGACT GTCGCGCCGC CTGTACGACA CGGCGCTGTC GTGCCGGATG
CGCCCACTGG CCGATGGCAT CACCGGCTAC TCGCGCATGG TGCGCGACCT GGGCCGCTCG
CTCGGCAAGC GTGTCCGACT GGAGTTGTCC GGCGAGCAAA CCCAGGTCGA CCGGGACATC
CTGGAGCATC TCGACGCGCC GCTGGCTCAC CTGCTGCGCA ATGCCGTGGA TCATGGCATC
GAAGCGCCGG ACACGCGCCG CGCCGCCGGC AAGCCGGAAG AAGGCCGCGT ATCACTCCAT
GCGTGGCACA ACGCCGGCCG GCTTGTGATC GAGATCTTCG ATGACGGCGC GGGCGTCGAT
CTGGAAGCGT TGCGCGCCGC CATCGTGCGG CGAGGCCTCG CCCAGGCGGA CACCGTCGCG
CGGCTATCGC AAGCCGAATT GCTCGAGTTC CTGCTGCTGC CGGGTTTCAG CATGCGCGAG
ACCGTTTCCG AGGTCTCCGG CCGCGGTGTC GGGCTCGACG CCGTGCAGGA CATGGTGCGT
GCCGTGCGGG GCAGCCTGAG GCTTTCCCAG CAGCCTGGCA GCGGCCTGCA CTTCCATCTC
GAGTTGCCCC TGACGCTGTC GATCGTGCGG GCGCTGCTCG TGGAAATATC GGGCGAAGCC
TATGCCTTCC CGCTGGGCCA CGTGCTGCGT GCCGTGGCCG TGCGCCGCGA AGACATCGAA
CAGACCGAGC AGCACCAGCA CTTCCGCCAC GATGGCAAGC CGGTGGGGCT GATCAGCGCC
GCGCAGGTGC TCCAGCGTCC CGAGCGTGGC CAGGATGGAG ATACCGTTCC CGTGGTCGTC
ATCGGCGAGC AGGATCGTGT GTATGGCATC GCAGTGGATC GCCTGATCGG CGAGCGATTG
CTGGTGGTGC AGCCACTCGC GCAGGCCCTC GGCAAGATCA AGGACATCGC GGCGGGCAGC
CTGACCGACG ATGGCATGCC GGTCCTGATC TTCGACGTCG AGGACATGCT GCGGTCGGTG
GAGAAACTCG TCTCCGATGG CCGCATCGAA CGGGTGCGCC ACGGCGGCGA GGAAGCCACC
CAGACGCGAC GCAAGCGCGT GCTGGTGGTG GATGACTCGC TGACCGTGCG GGAACTGGAG
CGCAAGCTGC TGAGCGGACG CGGCTACGAC GTGGCCGTCG CGGTGGACGG CATGGATGGA
TGGAACGTGC TCCGCGCGGA ATCGTTCGAT CTGGTGATCA CCGACGTCGA CATGCCACGC
ATGGACGGCA TTGAACTCGT CAGCCGGATA CGAGGCGATA CCCGCCTGAC GCATCTCCCC
GTGATGATCG TCTCTTACAA GGACCGCGAG CAGGATCGCG AGCGCGGCCT GCAGGCTGGC
GCGGATTACT ATCTGGCCAA AGGCAGCTTC CACGATACCG CGCTGCTCGA CGCGGTACGT
GACCTGATCG GCGAGGCACG CTCATGA
 
Protein sequence
MNPEQLRDAS LLDLFALEAD AQADVLNAGL LALERDPTAA VQLEACMRAA HSLKGAARIV 
GLEGGVRVAH VMEDCLVAAQ RGGLLLSASH IDALLQGTDL LQRIGHPPDG NANWPELGGK
AEIDAFVARL EALLDGGADV AALAAPTVLP PAAEPAPPEP PLPTVNHPST STVVPAQPQE
YTGSNQERIL RVNAERLDRL LAMAGESMVE THWLRPFGVA IQQARRQQMR VMQALDGVQA
LLDSPDSTVP RLRAALMETR QLLEDSHGQL TQRVEEFDQY DHRQSGLSRR LYDTALSCRM
RPLADGITGY SRMVRDLGRS LGKRVRLELS GEQTQVDRDI LEHLDAPLAH LLRNAVDHGI
EAPDTRRAAG KPEEGRVSLH AWHNAGRLVI EIFDDGAGVD LEALRAAIVR RGLAQADTVA
RLSQAELLEF LLLPGFSMRE TVSEVSGRGV GLDAVQDMVR AVRGSLRLSQ QPGSGLHFHL
ELPLTLSIVR ALLVEISGEA YAFPLGHVLR AVAVRREDIE QTEQHQHFRH DGKPVGLISA
AQVLQRPERG QDGDTVPVVV IGEQDRVYGI AVDRLIGERL LVVQPLAQAL GKIKDIAAGS
LTDDGMPVLI FDVEDMLRSV EKLVSDGRIE RVRHGGEEAT QTRRKRVLVV DDSLTVRELE
RKLLSGRGYD VAVAVDGMDG WNVLRAESFD LVITDVDMPR MDGIELVSRI RGDTRLTHLP
VMIVSYKDRE QDRERGLQAG ADYYLAKGSF HDTALLDAVR DLIGEARS