| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3392 |
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| Symbol | |
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| ID | 4040236 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 3665370 |
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| End bp | 3667721 |
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| Gene Length | 2352 bp |
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| Protein Length | 783 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637978807 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_585533 |
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| Protein GI | 94312323 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0849213 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAAAA CCCGAGCCAA CCAACCCGTC TTTCGTACCG CCTGCGCCCG CGCCGTCGTC
CTGCTGTGCG GCCTGTCGCT GCTGGCGCCC GCCCCGCTCT GGGCCCAGCC ATCCCAGCAG
CCACCGCAAC CGAACGACAT CGGCTCGCGC AGCAATCGCG ACCAGGTGGT GCTGAACTTC
GTCAACGCCG ATCTGGAGTC GGTGGTGAAG GCGGTCGGTC AGGCCACCGG CAAGAACTTC
GTGATCGATC CGCGCGTGAA GGGCACCGTG AATCTGGTCA CGGAGCAGCC GGTCTCGCGC
GCGCAGGCGC TGGAAACGCT CGGTTCCGTG CTGCGGATGC AGGGTTACGC GATGGTCCAG
TCCAACGGCT TCACCAAGGT CGTACCCGAA GCCGATGCCA AACTGCAGGG CTCGCCCACG
GTTGTCGGTC CCAGCAGCAA TCGCGGCGAC CAGGTGGTGA CGCAGGTCTT CCGCCTGAAC
TACGAATCGG CCAACAACCT GGTGCCAGTG CTGCGGCCGA TGATCGCGCC GAACAACACG
ATCACCGCTT ACCCGGCCAA CAACACGCTG GTCATCACCG ACTACGCGGA CAATCTGCGC
CGTCTGGCAC GGATCATCGC CGCGGTGGAT GCGCCCGCGT CCGGCGAAGT GGAGCTGATT
CCGCTCAAGA ACGCGATCGC CAGCGATGCA GCAGTGGTCC TGCAGAAACT GCTCGACCCG
ACCGCCGCCG CAGGTGGAGC CGGCGCTGGC GACGCGAGCC TGCGCACGAC CGTCGTGGCG
GAACCGCGCA GCAACTCGCT GATGATCCGC GCCTCCAGCC GCGCACGCGT GCAGCAGGCA
CGCCAGCTCA TCGAGAAGAT CGACCAGCCG TTCGCGCGCC CTGGCAACAT CTGGGTGGTG
CCGCTCAGGA ATGCCGACGC CGTGAAGCTC GCGGCCACGC TGCGGGCCAT CGTTGCGGCA
GACAGCAGTT TCTCCAGCTC GACGCAACCC GGCGGCGGCG CGACGGGCGG CGCCGCAATG
CAATCCACCT CATTGCCGCA AGGCGGCCAG TACACCGGCG GCAATACCGG CAACTACAAC
CGCAGCGGCT CCGGCGGCGG CTTCGGCAGC GGCGGCAGCA ACGCGTTCTC CGCATCGTTC
GCGGTCAACC AGCAGCCAAC CACGGGCGGC ATCGTCCAGG CCGACCCGTC GACGAACTCG
CTGATCATTA CCGCCAGCGA GCCGGTGTAC CGCAATCTGC GCGGCGTGAT CGACGACCTC
GACGCGCGGC GCGCGCAGGT CTACATCGAA TCGATGATCG TGGAGGTCAG CGGCACGCTG
GACAGCCAGC TTGGCATCCA GTGGCAAGGG CTGATCAATT CGGGCGGCAA CACCGTCGGC
TTCGCGGGGA CCAACTTCGG TACCGGCGGC CAGAACATCA TCAACCTGAC TGCGGCGGCC
GCGCTCTACA ACCAGAACAA GACCGCCGGC CTGGCGGCCA TCAGTGGCCT CGTGCCCGAT
GTGGGCGGCC TGAATCTTGG GGTGATCAAC AAGGCCATCG GCCTGGGCGC GCTGCTCCAC
GCGCTGGGAC AGAACACCAG CGTGAACCTG CTGTCCACGC CGAACCTGAT CACACTCGAG
AACGAGGAAG CGAAGATCCT CATCGGCCAG AACATTCCGA TCACCACGGG ATCGTACGCA
CAGACTGGCA GTTCGACCTC GGTGACGCCG TTCCAGACGT TCGACCGCAA GGATGTCGGC
ATCACGCTGC GCGTGCGCCC ACAGATTTCC GAAGGCGGCT TGGTCAAGAT GCAGATCTAC
CAGGAGTCTT CGCAAGTGGC GCCCGGCACG CTCACCAACC CGCAGGGCCC CACCACGAAC
GTGCGATCGA TCGAAACCAA TGTGCTCGTG GACGATGGCC AGATCATCGT GCTGGGCGGC
CTGATCGAGG ACAACTACGG CGACAACGTC CAGAAAGTGC CGCTGCTCGG AGACATCCCC
TACCTCGGCT CGTTGTTCCG CTACGAGAAC AAGACCCGCT CGAAGACCAA TCTGCTGGTG
TTCCTGCGCC CCTACGTGAT GCGCACCACC ACCGCCACGG ATCGTCTGAC GCAGGATCGC
TACGACTTCA TCCGCGGCCA GCAGCAGAAC TTCGTCTCGC CGAACATGGT GGTCCGCGAG
CTGAACACAC CCGTGCTGCC GCCGGCCGAT GCGCCGACCG CGCCGTTCGT CGACCCGCGC
TACAACGGTC CGGTGCCCGG CCCGGTGCCC CTTGCGCCGG GACAACCGTC CACGTCCGCA
CCCGCGCCAC AGACCGTGCC GCAGCCGGTA CAGCGGCCGC TCTCGCAGAC CACTTCCGGC
CAGGGCGCGT AA
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| Protein sequence | MMKTRANQPV FRTACARAVV LLCGLSLLAP APLWAQPSQQ PPQPNDIGSR SNRDQVVLNF
VNADLESVVK AVGQATGKNF VIDPRVKGTV NLVTEQPVSR AQALETLGSV LRMQGYAMVQ
SNGFTKVVPE ADAKLQGSPT VVGPSSNRGD QVVTQVFRLN YESANNLVPV LRPMIAPNNT
ITAYPANNTL VITDYADNLR RLARIIAAVD APASGEVELI PLKNAIASDA AVVLQKLLDP
TAAAGGAGAG DASLRTTVVA EPRSNSLMIR ASSRARVQQA RQLIEKIDQP FARPGNIWVV
PLRNADAVKL AATLRAIVAA DSSFSSSTQP GGGATGGAAM QSTSLPQGGQ YTGGNTGNYN
RSGSGGGFGS GGSNAFSASF AVNQQPTTGG IVQADPSTNS LIITASEPVY RNLRGVIDDL
DARRAQVYIE SMIVEVSGTL DSQLGIQWQG LINSGGNTVG FAGTNFGTGG QNIINLTAAA
ALYNQNKTAG LAAISGLVPD VGGLNLGVIN KAIGLGALLH ALGQNTSVNL LSTPNLITLE
NEEAKILIGQ NIPITTGSYA QTGSSTSVTP FQTFDRKDVG ITLRVRPQIS EGGLVKMQIY
QESSQVAPGT LTNPQGPTTN VRSIETNVLV DDGQIIVLGG LIEDNYGDNV QKVPLLGDIP
YLGSLFRYEN KTRSKTNLLV FLRPYVMRTT TATDRLTQDR YDFIRGQQQN FVSPNMVVRE
LNTPVLPPAD APTAPFVDPR YNGPVPGPVP LAPGQPSTSA PAPQTVPQPV QRPLSQTTSG
QGA
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