Gene Rmet_2936 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_2936 
Symbol 
ID4039764 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp3191030 
End bp3192073 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content61% 
IMG OID637978336 
Producttwitching motility protein 
Protein accessionYP_585078 
Protein GI94311868 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT 
TIGRFAM ID[TIGR01420] pilus retraction protein PilT 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.745836 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACATCG CGCAGCTATT GGCTTTTGCG GTCAAGAACA AGGCATCCGA TCTCCACCTC 
TCGGCTGACA TGCCGCCGAT GGTGCGTATT CACGGGGATA TGCGCCGCAT CAACGTCGCG
GCAATGACGC ACAAGGACGT CCACGCCATG GTGTACGACA TCATGAGCGA CGTTCAGCGC
AAGTCTTATG AAGAGCGCCT TGAGGTCGAT TTCTCCTTCG AGATCTCTGG TCTGTCCCGT
TTCCGGGTCA ACGCCTATAC CACCCAGCGC GGCGCGGCCG CGGTGTTCCG GACAATTCCG
TCGAAGGTCC TGACGCTCGA GGACCTGCGC GCGCCCGCCG TGTTCGCCGA TCTGTGCATG
AAGCCGCGTG GCCTGGTGCT GGTCACCGGG CCCACGGGCT CGGGCAAGTC GACCACGCTC
GCCGCGATGG TCGACCATCG CAACGACAAC GACATGGGTC ACATCCTCAC GGTGGAGGAT
CCAATCGAAT TCGTGCATCA GTCCAAGAAG AGTCTGATCA ACCAGCGCGA GCTTGGCCCT
CACACCCATT CGTTCGCCAA CGCGCTGCGC TCGGCACTGC GCGAGGACCC GGACGTGGTT
CTGGTGGGCG AATTGCGTGA CCTGGAAACG ATCCGCCTGG CGCTGACCGC CGCGGAAACC
GGTCACCTGG TTTTCGCCAC GCTGCACACG AGTTCGGCCG CCAAGACGAT TGACCGTGTG
GTCGACGTGT TCCCGCCGGA AGAAAAGGAC ATGGTGCGAA CCATGCTGTC GGAGTCGCTC
GAGGCCGTGA TCTCGCAGAC GCTGCTCAAG ACACGCGACG GCAACGGTCG GACGGCGGCA
CATGAAATCA TGATCGCCAC GCCTGCGATT CGCCACCTGA TCCGCGAAAA CAAGATCGCG
CAGATGTACT CGATGATGCA GACGTCGAGC GGCCTGGGCA TGCAGACGCT GGACCAGTGC
CTGAGCGACC TGATCAAGCG GGGCATGATC AACTACAGCG ACGCGCGGGC GATTGCGAAA
AATCCCGACG CCTTCATGGG TTAA
 
Protein sequence
MDIAQLLAFA VKNKASDLHL SADMPPMVRI HGDMRRINVA AMTHKDVHAM VYDIMSDVQR 
KSYEERLEVD FSFEISGLSR FRVNAYTTQR GAAAVFRTIP SKVLTLEDLR APAVFADLCM
KPRGLVLVTG PTGSGKSTTL AAMVDHRNDN DMGHILTVED PIEFVHQSKK SLINQRELGP
HTHSFANALR SALREDPDVV LVGELRDLET IRLALTAAET GHLVFATLHT SSAAKTIDRV
VDVFPPEEKD MVRTMLSESL EAVISQTLLK TRDGNGRTAA HEIMIATPAI RHLIRENKIA
QMYSMMQTSS GLGMQTLDQC LSDLIKRGMI NYSDARAIAK NPDAFMG