| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2789 |
|---|
| Symbol | |
|---|
| ID | 4039615 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 3035218 |
|---|
| End bp | 3037314 |
|---|
| Gene Length | 2097 bp |
|---|
| Protein Length | 698 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637978188 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_584931 |
|---|
| Protein GI | 94311721 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.973502 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGCC GAAGGTGGCA TACCCCATCG CCATATGGCC CGCGGGGGAA CGGGCCTGGC
CGTTCTCTTC CATCCCTGCT CATGCGTTCC ACGCTATCCA GGTCGACCGC CGCGCTGAAG
CCGTCGGTTC GCCCCTCCAT GCCCGCCATC CTGGCGGCCA TCGCCCTTTT TCCGTCCGCA
TCGGTCTTCG CGCAGGACGC GACGCCAGAT GAGTCGTCGA CCACCACGCC GGCCAGCGCA
TCGGCCAATG GTCCCGCTCC CGCTTCCGCA CCGGCAGCCG CACCGGCCGC CGCGCAGGCG
GCCAGCGGGC AGACGCTGGC GCCCGTAGTC GTCACCGCCT CCCGAACCGC GCAGTCGGTG
ACCGAGGCCC TGCCGCACAC CACGGTGGTC ACCCAGGAAG ACATCGTCAA CTCACAGGCT
CCGGACCTGC GCTCGCTACT GCGCAACCAG GCGGGCGTGG AGTTCTCGAC CAACGGCGGC
ATGGGTACCA ATACCTCGCT GTTCATGCGC GGCGCCAATT CGAACCAGGT GCTGATCATG
ATCGACGGCG TGCGGATTTC CGGCGTCAGC AACGGTAATG CGCAGATCGC CAATATCTTG
CCCGACCAGA TCGACCATAT CGAAGTGGTG CGCGGCAACG TCTCGGCGCT CTATGGCTCC
GACGCCGTTG GTGGCGTGGT GCAGATCTTC ACCAAGAGTG GCGCGGGCCA GGCGCCTGCC
GCCAACGCGC AGGTGGAGTA CGGCAGCAAC AATACCCGCC AGGGCACGGT GGGTTACGGT
GGCCAGATCG GTGCCACCTC GTTCAACGTC ACCGGCTCGA TGTACAAGAC CGATGGCTTC
TCGGCCATCA ATGCGGCGCA GTGGAACGCC GACAATCCGA AGAGCGCCGC GCGCGGTATC
GGCCCGAATC CGGCCAACAA CCCGTACGAG AACAAGAGCA TCTCGGGCCA GATCAAGCAC
CAGTTCACGC AGGACTGGGA CGCTGGCGTC GCGACCTACT ACTCGAACAG CCAGCTTTCC
TACGACAACG CCTACGGCAA GCCGACCGAC GACTACCGCA TGGATAGCAA GCTCTACACG
CTGTCCGCGT TCGTCAACGG CAAGGTGCTA TCTGACTGGA CCACGCATTT CAAGGTTGCG
CAAAGCGAAG ACCGCAGCGA AGGCACGATC AACGGCCTGT TCGACAGCCT GTTCAGCACG
CGCACCCGCC AGTTCAACTG GCAGAACGAG TACGCGCTGA CACCCGACCA TACGCTGATG
TTTGGCACGG ACTGGCTGCA GCAGGAGCTG GCTTCGAGCT CGTACAACGC GCCGTCGCGC
AATGTGTTTT CGGTCTATGG CGGCTACGAG GGGCGTATCG GCAAGCACCA GATCCAGTTG
AACGGCCGTA ACGACCACTA TTCCGATTTC GGCGACCAGG GCAGCTTCTT CGCCGGCTAC
GGCTACTACC TGACCAGCGC GGTCAAGTTG CTTGCCAACG TCAGCAATGC GTTCCGCGCG
CCGACGTTCA ACGAGCTCTA CTACCCGTAC TACGGCCAGC CGAACCTGCA GCCCGAGCGC
GCCAAGTCGG CGGAGGTGGG GGTGCAGGTG GAGACGGCGT CGACCGGCCT GCTGCGCGTG
ACCGCGTTCG AGACGCGCTA CAACGACCTG ATCGTCTCCG CGTTGCAGCC CAGCGGCCTC
TACCTGGCGC AGAACGTCAA CAAGGCCAAG GTGCAGGGGA TCGAGGCATC GTGGCGCGCC
AGCCTGTGGG GCACTGACGT GGGCGCCAGC GTGACGTTCC AGAATCCGCT GGATGAGACC
AACAATACGC AGCTTCTGCG GCGTGCCCGG CGCCATGCGT CGTTCGACGT GGGCCGGAAT
TTCGGAAACT GGCGTTTCGG CGGTGAATGG CTGGTATCCT CGGCGCGACT CGACAGCGGT
TCGCGCACGC TGGGCGGGTA CGGTATCGTC AACCTGAACG CCCGCTACAA CATCGACAAA
CAATGGTTCG TCGCCGCCCG AGTGGAAAAC CTGTTCGACA AGAACTACCA GCTGGCCTAC
CCCTACAACA CGCAGGGCAG GGCCGGCTTC ATCACGCTGG GATGGCGTCA GAAGTGA
|
|---|
| Protein sequence | MPRRRWHTPS PYGPRGNGPG RSLPSLLMRS TLSRSTAALK PSVRPSMPAI LAAIALFPSA
SVFAQDATPD ESSTTTPASA SANGPAPASA PAAAPAAAQA ASGQTLAPVV VTASRTAQSV
TEALPHTTVV TQEDIVNSQA PDLRSLLRNQ AGVEFSTNGG MGTNTSLFMR GANSNQVLIM
IDGVRISGVS NGNAQIANIL PDQIDHIEVV RGNVSALYGS DAVGGVVQIF TKSGAGQAPA
ANAQVEYGSN NTRQGTVGYG GQIGATSFNV TGSMYKTDGF SAINAAQWNA DNPKSAARGI
GPNPANNPYE NKSISGQIKH QFTQDWDAGV ATYYSNSQLS YDNAYGKPTD DYRMDSKLYT
LSAFVNGKVL SDWTTHFKVA QSEDRSEGTI NGLFDSLFST RTRQFNWQNE YALTPDHTLM
FGTDWLQQEL ASSSYNAPSR NVFSVYGGYE GRIGKHQIQL NGRNDHYSDF GDQGSFFAGY
GYYLTSAVKL LANVSNAFRA PTFNELYYPY YGQPNLQPER AKSAEVGVQV ETASTGLLRV
TAFETRYNDL IVSALQPSGL YLAQNVNKAK VQGIEASWRA SLWGTDVGAS VTFQNPLDET
NNTQLLRRAR RHASFDVGRN FGNWRFGGEW LVSSARLDSG SRTLGGYGIV NLNARYNIDK
QWFVAARVEN LFDKNYQLAY PYNTQGRAGF ITLGWRQK
|
|---|
| |