| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2615 |
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| Symbol | |
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| ID | 4039441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 2845301 |
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| End bp | 2847214 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637978016 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_584761 |
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| Protein GI | 94311551 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0207867 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.922526 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTACA CGCTGCTCAA TAAAATCGAC GACCCCGCGG ACCTGCGCAA GCTGGACCGT
CGCCAGCTCG ACACGCTGGC CGAGGAACTC CGCGCCTACG TGCTCGAATC GGTCTCGCAA
ACCGGCGGGC ACCTGTCGTC CAACCTCGGC ACGGTGGAGC TGACGATCGC GCTGCACTAT
GTCTTCGACA CACCGAACGA TCGCGTGGTC TGGGACGTGG GTCACCAGAG CTATCCCCAC
AAGATCCTGA CTGGCCGCCG CGACCGCATG TCGACGCTGC GCCAGTACGG TGGCATCTCC
GGCTTCCCGC GCCGTGCCGA GAGCGAGTAC GACACTTTCG GTACTGCGCA TTCGTCGACG
TCGATTTCCG CGGCGCTGGG CATGGCGCTC GGTGCCCGTA CCCGGGGCGA GAAGCGCGTG
GGTATTGCCG TGATCGGCGA TGGCGCGATG ACCGCCGGCA TGGCTTTCGA AGCCATGAAC
AATGCGGGCG TCTACAAGGA CCTGCCGATG CTGGTGGTGC TGAACGACAA CGACATGTCG
ATCTCCCCGC CGGTGGGCAT GTTGAACAAG CACCTGGCGC GCCTGATGTC GGGCCAGTTC
TACGCGGCCA CCAAGAAGGG CATCGAGAAG GTGCTGTCGG TGGCGCCGCC GGTGCTCGAA
TTCGCCAAGC GCCTGGAAGA ACATGCCAAG GGCATGGTCG TGCCGGCCAC GCTGTTCGAA
GAATTCGGTT TCGACTACGT CGGCCCGATC GACGGCCACG ACCTCGAGTC GCTGGTCCCG
ACGCTGCAGA ACATCCGCCA GCGCGCGCTG GAAGGCCACG GCCCGCAGTT CCTGCACGTG
GTGACCAAGA AGGGCCAGGG CTACAAGCTG GCCGAGGCCG ATCCGATCCT CTACCACGGC
CCGGGCAAGT TCAATCCGGC CGAGGGTATC CGTCCGTCGG CCAAGCCGTC GCGCAAGACC
TACACGCAGG TGTTTGGCGA GTGGCTGTGC GACATGGCCG CCGCCGACAA GCGTCTGATC
GGCGTGACGC CGGCCATGCG CGAAGGCTCG GGCATGGTCG AGTTCGAAAA GCGCTTCCCG
GACCGCTACT ACGACGTCGG TATCGCAGAG CAGCACGCGG TGACCTTCGC CGGCGGCCTG
GCCTGTGAGG GCCTGAAGCC GGTTGTGGCG ATCTACTCGA CGTTCCTGCA ACGTGGTTAC
GACCAGCTTA TTCACGACGT GGCGCTGCAG AACCTGCCAG TGGTGTTCGC GCTGGACCGC
GCTGGTCTGG TGGGCGCCGA TGGTGCCACG CACGCCGGTG TGTACGACAT CCCGTTCCTG
CGCTGCATCC CGAACATGAT GGTGATGGTG CCGGCAGACG AGAACGAGTG CCGTCAGTTG
CTGACGACCG CGTTCCAGCA GGACTGCCCG ACCGCCGTGC GCTATCCGCG CGGCGCCGGC
GTCGGCGTGG CCACGCAGCC CGAACTGACC GCGCTGCCGG TGGGCAAGGG CGAGATCCGC
CGCGAAGGCC ATGCCCGCGC AGGTCAGCGT GTGGCGATCA TGGCGTTCGG TTCGATGGTG
CATCCGGCCC TGACCGCGGC TGAGCAACTC GATGCCACGG TGGCCAACAT GCGTTTCGTG
AAGCCGCTCG ATGTGGAGCT GGTCAAACAA CTGGCCGCCA ATCACGACTT CCTGGTCACG
GTGGAAGAGG GCGCCACGAT GGGCGGTGCC GGTAGCGCCG TGCTCGAGGC GCTGGCCGAG
GCGGGTATCG AACTGCCGAC GTTGGTGCTG GGCCTGCCCG ACAAGTTCAT CGACCATGGC
GATCCGGCGC ATCTGCTGTC GCTGTGCGGC CTCGATGCGG CCGGCATCGA GCGTTCGGTG
CGCGAGCGCT TCAGCCTGAC GGCGCAACCG GTCAAGGTGG CGAGCGTGGC CTGA
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| Protein sequence | MTYTLLNKID DPADLRKLDR RQLDTLAEEL RAYVLESVSQ TGGHLSSNLG TVELTIALHY
VFDTPNDRVV WDVGHQSYPH KILTGRRDRM STLRQYGGIS GFPRRAESEY DTFGTAHSST
SISAALGMAL GARTRGEKRV GIAVIGDGAM TAGMAFEAMN NAGVYKDLPM LVVLNDNDMS
ISPPVGMLNK HLARLMSGQF YAATKKGIEK VLSVAPPVLE FAKRLEEHAK GMVVPATLFE
EFGFDYVGPI DGHDLESLVP TLQNIRQRAL EGHGPQFLHV VTKKGQGYKL AEADPILYHG
PGKFNPAEGI RPSAKPSRKT YTQVFGEWLC DMAAADKRLI GVTPAMREGS GMVEFEKRFP
DRYYDVGIAE QHAVTFAGGL ACEGLKPVVA IYSTFLQRGY DQLIHDVALQ NLPVVFALDR
AGLVGADGAT HAGVYDIPFL RCIPNMMVMV PADENECRQL LTTAFQQDCP TAVRYPRGAG
VGVATQPELT ALPVGKGEIR REGHARAGQR VAIMAFGSMV HPALTAAEQL DATVANMRFV
KPLDVELVKQ LAANHDFLVT VEEGATMGGA GSAVLEALAE AGIELPTLVL GLPDKFIDHG
DPAHLLSLCG LDAAGIERSV RERFSLTAQP VKVASVA
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