| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2496 |
|---|
| Symbol | |
|---|
| ID | 4039319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 2709915 |
|---|
| End bp | 2711531 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637977895 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_584642 |
|---|
| Protein GI | 94311432 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0292957 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAAC ACCGTACGAG GAGCCCACCG ATGATCCGCC GCACGCTGCT GCAAGCATCC
CTTTCGATTG CGTTGAGCGC CACCGCGCTC ACGCTTTTGC CCGCCCAGGC GGCTCATGCC
GAAGACCTGC GCATCGGCCT GGCCGCCGAC GTGACGTCCA TGGACCCGCA CTGGAACAAC
TCGGGCCCGA ACAACGCCAT CGCACTCCAT ATCTTCGAGT CGCTCGTATT CATGGACAAG
AACGCGCGCT ACATTCCCGG CCTCGCGCTA TCGTGGAAGC CACTCAACGC GATCACGTGG
GAGATCAAGC TTCGCCCGAA CGTGAAATGG CATGACGGCT CGCCGTTCAC GAGCGAGGAC
GTCAAGGCGT CACTGGAGCG CCCCGAGAAG CTGACCAACG CGCCGGGGTC GTTCACCAGC
TACACCAAGC CGATCGCCCG CATCGACACG CCCGACCCGC TGACCGTGCG CCTGACCATG
AGCGTGCCGA ATTATGCGAA CCTGGCCAAT GATCTGAACA GCGTGCCGAT CATGCCGAAG
AAGATTGCCG CGAATCTGAC CCAGGCCGAT TTCGATTCGG GCAAGGCGAT GATCGGCACG
GGTCCGTTCA AGTTCGTGCG CTTCGCGCGC GGCCAGGAAA TCGTGATGAC GAAGAATCCC
GACTACTGGG GGCCAAAGCC CGAATGGGAC CGCGCAATCT TCCGGATCCT GACCGACAAT
GGCGCGCGCT CGGCCGCCCT GCTTGCCGGC GATGTGGACG TGATCGAAAG CGTGCCATCC
GCCGACGTGG CGAAGCTCAA GCAGAACCCG AAGTTCAAGA TCGAGCAGAC GGTGTCGTGG
CGCACGATCT TCTGGCAGAT GGACCAGTCA CGCGACAACC CGCCGTTCGT CACGGACAAG
GCAGGCAAGC CGCTCGGCAA GAATCCTTTC AAGGACGCGC GCGTGCGCGC GGCGATCAGC
AAGGCCCTCA ACCGCGACGC CATTGTCAGC CGCATCATGG AAGGCTTGGC GGTGCCGGCC
TCGTCGATCG TCTCGCCGCA GATCTTCGGC CATCCTGGCA CCAAGCCGGA CGCCTATGAC
GTGGAAGGTG CGAAGAAGCT GCTGGCCGCC GCAGGCTATC CGGACGGCTT CGGCCTCACG
CTGCACGCCA CGAACAATCG CTATCTGAAT GACGCCCAGG TTGCGCAGGC CACGGCCGGG
ATGCTGACGC GTATCGGCAT CCAGACCAAG GTTGAGACGC TGCCCGTTGC CACGTACTTC
ACGCGCGCGC GCCAGGGGGA ATTTGCATTC GAGATGCTAG GCTGGGGATC GGCCGCTGCC
GACGTGGCGC TACGCTCGAT CACGGGCACC CCGAACCCGA AGACCGGCTA CGGCACGTGG
AACTGGGGCA AGTACAGCAA TCCGCAGCTT GATCAGCTGA TCGAGAAATC GCTGACGACG
ATCTCCAGCG ACAAGGCCCG CGAGGAGAAT GCCCGCGCGG CGGCCAAGTT CGCGCTGGCC
GACCACGCGA TCATCCCGTC GCACAGCCAG CTTGCAATGT GGGCGATGCG CAAGGGCCTG
CGCTATGAGG CGCGCACCGA CGAGTGGTCG CTGGCGCAGT TCTTCCATAA GGAATGA
|
|---|
| Protein sequence | MAEHRTRSPP MIRRTLLQAS LSIALSATAL TLLPAQAAHA EDLRIGLAAD VTSMDPHWNN
SGPNNAIALH IFESLVFMDK NARYIPGLAL SWKPLNAITW EIKLRPNVKW HDGSPFTSED
VKASLERPEK LTNAPGSFTS YTKPIARIDT PDPLTVRLTM SVPNYANLAN DLNSVPIMPK
KIAANLTQAD FDSGKAMIGT GPFKFVRFAR GQEIVMTKNP DYWGPKPEWD RAIFRILTDN
GARSAALLAG DVDVIESVPS ADVAKLKQNP KFKIEQTVSW RTIFWQMDQS RDNPPFVTDK
AGKPLGKNPF KDARVRAAIS KALNRDAIVS RIMEGLAVPA SSIVSPQIFG HPGTKPDAYD
VEGAKKLLAA AGYPDGFGLT LHATNNRYLN DAQVAQATAG MLTRIGIQTK VETLPVATYF
TRARQGEFAF EMLGWGSAAA DVALRSITGT PNPKTGYGTW NWGKYSNPQL DQLIEKSLTT
ISSDKAREEN ARAAAKFALA DHAIIPSHSQ LAMWAMRKGL RYEARTDEWS LAQFFHKE
|
|---|
| |