| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2484 |
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| Symbol | sdhA |
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| ID | 4039307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 2697552 |
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| End bp | 2699330 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637977883 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_584630 |
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| Protein GI | 94311420 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.076646 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCGCAG TCAAGACTGG ATTGCCGCGT CGCAAATTTG ACGTGGTCAT CGTCGGGGCG
GGCGGCGCCG GGATGCGCGC ATCCCTCCAG CTCGCGGAAG CCGGCCTGAA CGTGGCCGTG
CTGTCGAAGG TTTTCCCGAC GCGCTCGCAC ACCGTGGCGG CGCAGGGCGG TATCGGTGCT
TCGCTTGGCA ACATGAGCGA AGACAACTGG CACTATCACT TCTACGACAC CATCAAGGGC
TCGGACTGGC TGGGCGACCA GGACGCCATC GAGTTCATGT GTCGTGAAGC ACCGAAGGTC
GTGTACGAAC TCGAACACTT CGGCATGCCG TTCGACCGTA ACGCCGATGG CACGATTTAC
CAGCGTCCGT TCGGCGGCCA CACCGCCAAC TACGGCGAAA AGCCGGTGCA ACGCGCTTGC
GCGGCCGCTG ACCGTACCGG TCACGCGCTG CTGCACACGC TGTACCAGCG CAACGTTCGC
GCCAAGACCC ACTTCTTCGT CGAATGGATG GCGCTGGATC TGATCCGCGA CGAGGACGGC
GACGTGCTGG GCGTGACCGC GCTGGAAATG GAAACCGGCG AAGTCTATAT CCTCGAAGCC
AAGACCACGC TGTTCGCGAC CGGCGGTGCC GGCCGTATCT ACGCGGCTTC CACCAATGCC
TTCATCAACA CCGGTGATGG CCTGGGCATG GCGGCACGTG CCGGCGTCCC GCTGGAAGAC
ATGGAGTTCT GGCAGTTCCA CCCGACCGGC GTGGCCGGCG CGGGCGTGCT GATCACGGAA
GGCGTGCGCG GCGAGGGCGG TATCCTGCGT AACAAGGATG GCGAGCGCTT CATGGAGCGC
TATGCCCCGA CGCTGAAGGA TCTGGCTCCG CGTGACTTCG TGTCGCGTTC GATGGACCAG
GAAATCAAGG AAGGCCGCGG CTGCGGTCCG AATGGCGACT ACGTGTTGCT CGACCTGACG
CACGTCGGCG CCGAGACGAT CATGAAGCGT CTGCCGTCGA TCCGCGAAAT CGGCATGAAG
TTCGCCAACG TCGACGCGAT CAAGGAACCG ATCCCCGTGG TGCCGACCAT CCACTACCAG
ATGGGTGGCA TTCCGACGAA CTTCCACGGT CAGGTCGTGG TGCCGAAGAA CGGCAACCCG
AACGAAGTGG TCAACGGCTT CTACGCCATC GGCGAATGCT CGTGCGTGTC GGTGCACGGC
GCCAACCGTC TGGGCACGAA CTCGCTGCTC GACCTCGTGG TGTTCGGCCG TGCGGCCGGT
AACCACATCG TCGCCAACGC GATGAAGCAG AAGGAACACA AGCCGCTGCC GGCAGATGCC
GCCGACCGCG CCATGGCCCG TCTGGCCAAG CTGCAGGGCA CGACCTCGGG TGAATACACC
CAGGACGTGG CCAACGATAT CCGCCGCAAC ATGCAATCGC ACGCCGGCGT GTTCCGTACG
CAGAAGCTGA TGGACGAAGG CGTCGAGCGC ATCCTGGAAG TGGCCGAGCG CGCCAACAAC
ATCCACCTGA AGGACAAGTC GAAGGTCTTT AACACCGCGC TGGTGGAAGC CCTGGAAGTG
TCGAACCTGG TGGAAGTGGC CAAGGCAACG ATGATCTCGG CCGCAGCCCG CAAGGAATCG
CGTGGCGCCC ACGCCCATAG CGACTTCCCG AATCGCGACG ACGAGAACTG GCTCAAGCAC
ACGCTGTTCT ACAGCGAAGG CAACCGCCTC GACTACAAGC CGGTGAAGAT GCAACCGCTG
ACGGTGGAAT CAGTTCCGCC GAAGGCCCGT ACGTTCTGA
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| Protein sequence | MVAVKTGLPR RKFDVVIVGA GGAGMRASLQ LAEAGLNVAV LSKVFPTRSH TVAAQGGIGA
SLGNMSEDNW HYHFYDTIKG SDWLGDQDAI EFMCREAPKV VYELEHFGMP FDRNADGTIY
QRPFGGHTAN YGEKPVQRAC AAADRTGHAL LHTLYQRNVR AKTHFFVEWM ALDLIRDEDG
DVLGVTALEM ETGEVYILEA KTTLFATGGA GRIYAASTNA FINTGDGLGM AARAGVPLED
MEFWQFHPTG VAGAGVLITE GVRGEGGILR NKDGERFMER YAPTLKDLAP RDFVSRSMDQ
EIKEGRGCGP NGDYVLLDLT HVGAETIMKR LPSIREIGMK FANVDAIKEP IPVVPTIHYQ
MGGIPTNFHG QVVVPKNGNP NEVVNGFYAI GECSCVSVHG ANRLGTNSLL DLVVFGRAAG
NHIVANAMKQ KEHKPLPADA ADRAMARLAK LQGTTSGEYT QDVANDIRRN MQSHAGVFRT
QKLMDEGVER ILEVAERANN IHLKDKSKVF NTALVEALEV SNLVEVAKAT MISAAARKES
RGAHAHSDFP NRDDENWLKH TLFYSEGNRL DYKPVKMQPL TVESVPPKAR TF
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