Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_2480 |
Symbol | |
ID | 4039303 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | - |
Start bp | 2693263 |
End bp | 2694390 |
Gene Length | 1128 bp |
Protein Length | 375 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637977879 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_584626 |
Protein GI | 94311416 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.143282 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0556416 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGTTGT CCCGTCTCAC GTCCACTGCC ATGGCCGCCG TGCTTGCCAC TGCCGGCCTC GCTGCCTTTA CTTCGGCCAA CGCCGAAACC ATCAAGATCG CCATTGCCGG CCCGATGAGC GGCTCGGTCG CCCAGTACGG CGACATGGTC AAGGCTGGTG CCCTGACCGC CATCGAACAG ATCAATGCCG CCGGCGGCGC CAACGGCAAC AAGTTCGAAG CCGTCATGAT GGACGACGCT TGCGAACCGA AGCAGGCTGT GGCCGTGGCC AACAAGATCG TGAGCCAGGG CATCCACTAC GTGATTGGTC ACGTGTGCTC GGGTTCGACG ATCCCGGCAT CGGATATCTA CGAGAACGAA GGCATCGTGA TGGTCACGCC GTCGGCTACC GCGCCGCAGC TGACCGAAAC GAAGAAGCGC AACTTCATCT TCCGTACGAT CGGCCGTGAT GACCAGCAAG GTCCCGCAGC CGCCCAGTAC ATCATCAACA AGGTCAAGCC GAAGAAGGTT GCCGTGCTGC ACGACAAGCA GTCGTACGGC CAGGGCATCG CCAGCTCGGT GAAGAAGGAC CTCGAAGCGG CCAAGATTCC CGTGGCGGTC TTCGAAGGCA TCAACGCCGG CGATTCCGAC TACTCCGCTG TCATCACCAA GCTGAAGTCG CAAGGCGTGG ACTTCGTCTA TTTCGGTGGC TATCACCCGG AAATGGGCCT GCTGCTGCGC CAGGCGCGTG AGCAGGGCGT CAAGGCGACC TTCATGGGTC CCGAGGGCGT TGGCAACAAG GACGTGACGG CCATCGCCGG TCCGGCATCG GAAGGCATGC TGGTGACGCT GCCGGCCGAC TTCTCGGCCG ATCCGGCCAA CGCGGCCCTG GTGAAGGCTT TCGCCGACAA GAAGCGTGAC CCGAACGGTC CGTTCCAGAT GCCTGCGTAC GCCGCCGTGA AGATCATTGG CGATGCCATC ACGGGCGCCA AGAGCACGGA CCCGACGAAG GTTGCCGCTT ACATGCACAA GAACGCGTTC AACACGCCGA TCGGCAAGGT TGAATATGAC GCGAAGGGCG ACCTGAAGTC GTTCAAGTTC GTCGTCTACA CGTGGCACAA GGACGCCACG AAGACCGCCG CCAACTAA
|
Protein sequence | MTLSRLTSTA MAAVLATAGL AAFTSANAET IKIAIAGPMS GSVAQYGDMV KAGALTAIEQ INAAGGANGN KFEAVMMDDA CEPKQAVAVA NKIVSQGIHY VIGHVCSGST IPASDIYENE GIVMVTPSAT APQLTETKKR NFIFRTIGRD DQQGPAAAQY IINKVKPKKV AVLHDKQSYG QGIASSVKKD LEAAKIPVAV FEGINAGDSD YSAVITKLKS QGVDFVYFGG YHPEMGLLLR QAREQGVKAT FMGPEGVGNK DVTAIAGPAS EGMLVTLPAD FSADPANAAL VKAFADKKRD PNGPFQMPAY AAVKIIGDAI TGAKSTDPTK VAAYMHKNAF NTPIGKVEYD AKGDLKSFKF VVYTWHKDAT KTAAN
|
| |