| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2475 |
|---|
| Symbol | |
|---|
| ID | 4039298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 2687720 |
|---|
| End bp | 2689129 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637977874 |
|---|
| Product | isopropylmalate isomerase large subunit |
|---|
| Protein accession | YP_584621 |
|---|
| Protein GI | 94311411 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
|---|
| TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.891959 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.311686 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGA CGCTCTACGA CAAACTCTGG GATGACCACA CCGTCCACGT CGAGGAAGAC
GGCACCACGC TGCTCTACAT CGATCGCCAC CTGCTTCACG AAGTGACCAG CCCGCAGGCG
TTCGAAGGAC TAAAGCTGGC GGAGCGTCCG GTCTGGCGCA TCAGCGCCAA CCTGGCCGTG
TCGGATCACA ACGTGCCGAC CACCGACCGC TCGCAAGGCA TCGCCGACCC GATCTCGAAG
CTCCAGGTGG ACACGCTCGA CCTGAACTGC GATGCCTATG GCATCACCCA GTTCAAGATG
AACGATCACC GCCAGGGCAT CGTTCACGTG ATCGGGCCGG AGCAGGGCGC CACGCTGCCC
GGCATGACCG TGGTCTGCGG TGACTCGCAC ACCAGCACGC ACGGCGCGTT CGGTGCGCTG
GCCCACGGCA TCGGCACGTC GGAAGTGGAG CATGTGCTGG CCACCCAGAC GTTGCTGGGC
AAGAAGGCCA AGAACATGCT GATCAAGGTG GAAGGCAAGC TGCCCCGCGG CTGCACCGCC
AAGGACATCG TGCTGGCCGT CATCGGCAAG ATCGGCACGG CGGGCGGCAC GGGCTACACG
ATGGAGTTCG CCGGCTCGGC CATTCGCGAC CTGACGATGG AAGGCCGCAT GACCGTCTGC
AACATGGCAA TCGAAGCCGG CGCGCGTGCC GGCCTGGTGG CCGTGGACGA TGTCACGCTC
GAATACGTCA AGAACCGTCC ATTCGCGCCG CAAGGCGTGG AGTGGGACCA GGCCGTGGCG
TACTGGCGCA CGCTGCATTC GGATGCCGGC GCCCACTTCG ACAAGGTTGT GGAGCTGCGT
GCCGAAGAAG TCCGTCCGCA GGTGACCTGG GGCACGTCGC CCGAAATGGT CATCAGCATC
GAGGACCGCG TTCCGGATCC GGAGAAGGAA AAGGACTCGA ACAAGCGCAA CGCGATGGAG
CGCGCGCTCG AGTACATGGG CCTGCAGCCG AACGTGCCGA TGGAGTCGAT CAACATCGAC
AAGGTGTTCA TCGGGTCCTG CACCAACAGC CGCATCGAAG ATATGCGTGC CGCCGCGTGG
GTCGTTCAGA AGCTGGGCCG CAAGGTCGCG TCGAACGTGA AGCTGGCGAT GGTGGTGCCG
GGATCGGGTC TGGTGAAGGA ACAGGCCGAG CGCGAAGGCC TGGACAAGAT CTTCAAGGCT
GCCGGCTTCG AATGGCGCGA GCCGGGGTGC TCGATGTGCC TGGCGATGAA CGCTGACCGC
CTGGATCCGG GCGAGCGCTG CGCGTCGACG TCGAATCGCA ACTTCGAAGG CCGTCAGGGC
GCCGGTGGCC GCACGCACCT GGTGAGCCCG GCGATGGCTG CCGCGGCCGC GATCGAGGGG
CACTTCGTCG ATATTCGCAA GCTCGGTTGA
|
|---|
| Protein sequence | MAKTLYDKLW DDHTVHVEED GTTLLYIDRH LLHEVTSPQA FEGLKLAERP VWRISANLAV
SDHNVPTTDR SQGIADPISK LQVDTLDLNC DAYGITQFKM NDHRQGIVHV IGPEQGATLP
GMTVVCGDSH TSTHGAFGAL AHGIGTSEVE HVLATQTLLG KKAKNMLIKV EGKLPRGCTA
KDIVLAVIGK IGTAGGTGYT MEFAGSAIRD LTMEGRMTVC NMAIEAGARA GLVAVDDVTL
EYVKNRPFAP QGVEWDQAVA YWRTLHSDAG AHFDKVVELR AEEVRPQVTW GTSPEMVISI
EDRVPDPEKE KDSNKRNAME RALEYMGLQP NVPMESINID KVFIGSCTNS RIEDMRAAAW
VVQKLGRKVA SNVKLAMVVP GSGLVKEQAE REGLDKIFKA AGFEWREPGC SMCLAMNADR
LDPGERCAST SNRNFEGRQG AGGRTHLVSP AMAAAAAIEG HFVDIRKLG
|
|---|
| |