| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2092 |
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| Symbol | |
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| ID | 4038899 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 2270745 |
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| End bp | 2273375 |
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| Gene Length | 2631 bp |
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| Protein Length | 876 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637977477 |
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| Product | RNAse R |
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| Protein accession | YP_584240 |
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| Protein GI | 94311030 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.300457 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAATCAGA ACAACTATCC GATCCCCAGC CGGGAAGAAA TCCTTGGCGT ACTGAGAACT
TCGGGGTCGC CCCTGTCGGC CGGCGATATC GCCAAGGCCC TGGCCGTCAC GCGCAAAGAG
CATGACGGCT TTCAGAAACG GCTCGCCGCG ATGGAACGCG ACGGCCAGAT CGAACTCAAT
CGCAAGGGCC GCTATGAGCT GGCCCATCAA CCCAATTTCG TGCTTGGCCG CGTGCAGGGC
CATCGGGACG GCTTCGGCTT CCTGATTCGC GACGACGGCG AGGACGATAT CTTCCTGCCC
GAGCGCGAGC TGCAGAAGGC GATGCACAAC GATCGCGCGC AGGTGCGCGT GGTTGGCTAT
GACCGACGCG GCCGTCCGGA AGGGCAGATC GTTGAGATCG TGGAGCGTGC CAATCGCTTC
GTGATCGGCC GACTGCTGTC CGAAAATGGC GTGCTTGTGG TGGCGCCGGA AGACAAGCGC
ATTGGCCAGG ACATCCTGAT TCCGCCCAAG GCCCAAGGCA AGGCGCGCGT GGGGCAGGTG
GTCAGCGTCG AACTGATGGA ATGGCCTGAT CGCTACGTGC AGCCGGTGGG CCGCGTGGTC
GAGGTGATTG GCGATATCGA CGATCCCGGC ATGGAGATCG AGATTGCCGT GCGCAAGTAT
GGCGTGCCGC ATCAGTTCTC GCCCGCTGCC GTCAAGGAAG CACAGGGGTT GCCCGATGAG
GTGCGTCAGG CCGACCTCGA TCATCGCATC GACCTGCGCG ACATTCCGCT GGTCACGATC
GATGGCGAGG ATGCGCGCGA CTTCGACGAT GCCGTCTATT GCGAGCAGGT CAAGATCGGC
CGTGCAAAGG GCTGGCGTCT GATCGTGGCG ATCGCCGACG TGTCGCACTA CGTGCGGCCG
GGTACGCCGC TCGATGCCGA TGCGCTGGAT CGCGCCACGT CGGTTTACTT CCCGCGCCGC
GTGATTCCGA TGCTGCCGGA GAAGCTGTCG AATGGCCTCT GCTCGCTGAA CCCGAACGTC
GACCGTCTGT GCATGGTTTG CGACGCGGTG ATCACGGCCA AGGGCGAACT CAAGGGCTAC
CAGTTCTATC CGGCGGTGAT GCACTCCGCG GCACGCCTGA CCTACAACGA GGTCTGGTCG
GTTCTGTCGA ATACCAAGGG GCCCGAGGCC CACAAGCGCG CGGAGCTGGT GCCGCATCTG
CAGAACCTGT ATGAGCTGTT CCAGGTTCTG CTCAAGGCTC GCCGTGCCCG TGGCGCGATC
GACTTCGACA CCACCGAAAC CTATATCGTC TGCAACGCGC AGGGCAAGAT CGAGCAGATC
TTGCCGCGCA CTCGCAACGA CGCGCACCGT CTGATCGAAG AGTGCATGTT GACGGCTAAC
GTCTGCGCGG CCGACTTCCT CGAGCGATTC AAGCATCCGG CGCTGTACCG GATTCACGCG
GGTCCGAGCG AAGAGAAGCT CAAGAATCTG CGCGAGTTCC TGAAGACCGC TGGGCTGTCG
CTTGGCGGTG GCGACAAGCC GCAGGCCTCG GACTATGCCG AGGTCATGGA CAAGATCAAG
TCGCGTCCCG ATGCGCCGAT GTTGCAGACG ATGCTGCTGC GTTCGATGCA GCAGGCGGTC
TACAGCCCGG ACAATATCGG CCACTTCGGC TTGGCCTACG AGGCGTACGC GCACTTCACC
AGCCCGATCC GCCGCTATCC GGACTTGCTC GTGCATCGTT CGATCAAGGC GATCCTCGCG
CACACGAAGT ATCGGCCGGC CTTTATCCAG GGGACGGAGC TCAATACGCA GATCTCGCCG
AAAGCGCGCC GGATGCAGGC CGCCGATGCC GAGAAGCGTG CCGAGAACGT TGCCGCGCGC
GCGAAGCGCG ACGAGGGCGT CTGGGACGAA CTGGGGTTGC ACTGCTCGGC CAACGAGCGT
CGTGCCGACG AGGCATCGCG CGACGTGGAG GCCTGGCTCA AGTGCTACTT CATGCGCGAC
AAGCTGGGCA GCGATTTCGC TGGCACGATC AGCGCGGTGA CGTCGTTCGG CATCTTCGTG
CAGCTCGACG AGCTGTATGT GGAAGGCCTT GTGCACGTGA CGGAACTGGG TAGTGACTAT
TTCCAGTACG ACGAGGCGCG CAACGAACTG CGTGGCGAGC GGACTGGTAT CCGCTATCGG
CTCACCGATC GCGTGCGCGT GCAGGTGTCG CGCGTCGACC TCGATGCCCG CAAGATCGAC
TTCCGTCTGG TGCAGGAGCC GTCCGCCAAG ACGCTGCGCG CCCGGGCCGG CGTGCCCGAG
CAGCCGCGGG TGCCGGCTGC CCACGCGGTG CCGGCGCGCA AGAAGGGACG CCAGCTTGCC
GCGTTGCTCG GTGGCACTTC GAAGCCGGAA GAATCGTTCG ACGAAACGCT CGACCGTGTG
ATCGAAGAGC AACCGGTGTT CGAGGCGGTC ATCACGCCGC TCAAGCCGCG CGACGCCCAT
GTCGGGCATG CGCCGCATGG CCGCGGGTCG GCGAAGAAGG CGCAGTCAGG CAAGCCCGCA
AAGCGAGCGG CCAAGCCAAA GCCGGCGCAT CTGAAGACCG AACGGCAGCC GACGACCAAG
CGCGCGCCCA AGCCCGCCGG CAAGAGCACG CGGCCGGCCC GCAAGCGCTA A
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| Protein sequence | MNQNNYPIPS REEILGVLRT SGSPLSAGDI AKALAVTRKE HDGFQKRLAA MERDGQIELN
RKGRYELAHQ PNFVLGRVQG HRDGFGFLIR DDGEDDIFLP ERELQKAMHN DRAQVRVVGY
DRRGRPEGQI VEIVERANRF VIGRLLSENG VLVVAPEDKR IGQDILIPPK AQGKARVGQV
VSVELMEWPD RYVQPVGRVV EVIGDIDDPG MEIEIAVRKY GVPHQFSPAA VKEAQGLPDE
VRQADLDHRI DLRDIPLVTI DGEDARDFDD AVYCEQVKIG RAKGWRLIVA IADVSHYVRP
GTPLDADALD RATSVYFPRR VIPMLPEKLS NGLCSLNPNV DRLCMVCDAV ITAKGELKGY
QFYPAVMHSA ARLTYNEVWS VLSNTKGPEA HKRAELVPHL QNLYELFQVL LKARRARGAI
DFDTTETYIV CNAQGKIEQI LPRTRNDAHR LIEECMLTAN VCAADFLERF KHPALYRIHA
GPSEEKLKNL REFLKTAGLS LGGGDKPQAS DYAEVMDKIK SRPDAPMLQT MLLRSMQQAV
YSPDNIGHFG LAYEAYAHFT SPIRRYPDLL VHRSIKAILA HTKYRPAFIQ GTELNTQISP
KARRMQAADA EKRAENVAAR AKRDEGVWDE LGLHCSANER RADEASRDVE AWLKCYFMRD
KLGSDFAGTI SAVTSFGIFV QLDELYVEGL VHVTELGSDY FQYDEARNEL RGERTGIRYR
LTDRVRVQVS RVDLDARKID FRLVQEPSAK TLRARAGVPE QPRVPAAHAV PARKKGRQLA
ALLGGTSKPE ESFDETLDRV IEEQPVFEAV ITPLKPRDAH VGHAPHGRGS AKKAQSGKPA
KRAAKPKPAH LKTERQPTTK RAPKPAGKST RPARKR
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