| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2059 |
|---|
| Symbol | |
|---|
| ID | 4038866 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 2230824 |
|---|
| End bp | 2232410 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637977444 |
|---|
| Product | nitrogen metabolism transcriptional regulator, NtrC, Fis family |
|---|
| Protein accession | YP_584207 |
|---|
| Protein GI | 94310997 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0914415 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACCGA GCAGACAAGC GACGCACATG AAGCCGATCT GGATAGTCGA CGACGATCAA
TCAATCCGCT GGGTCCTGGA AAAGGCCCTT GCCCGTGAAA GCCTGCTCTC CCGCAGTTTT
ACCAACGTGC GCGACGTGCT CGCGGCGCTG GAAGAGGACG AGCCGCAGGT CCTGATTTCG
GATATCCGAA TGCCCGGCGG TTCCGGCCTG GATTTGCTGC AGGCCATCAA GGCGCGGCAT
CCGGGCCTGC CCGTTATCGT GATGACGGCC TACTCGGACC TGGATAGCGC CGTGGCCGCG
TTCCAGGGGG GCGCGTTCGA GTACCTGGCC AAGCCGTTCG ATGTCGACAA GGCGGTCGAG
TTGATTCGCC GGGCGCTCGA GGAAAGCCTG CGCGAGGAGG AAATGGACGA TCGCCTGGTC
GATGCGCCGG AAATCCTCGG CCAGGCTCCG GCGATGCAGG ACGTGTTCCG CGCGATCGGT
CGCCTCTCGC AATCGAACGT CACCGTAATG ATCACCGGCG AGTCCGGTAC CGGCAAGGAA
CTGGTGGCGC GTGCGTTGCA CAAGCACAGC CCGCGCGCAA ATGGTCCGTT CATTGCGCTG
AATACGGCGG CAATTCCCAA GGATCTGCTC GAATCGGAAC TGTTCGGCCA TGAGCGTGGC
GCGTTCACCG GCGCGCAGAC CATGCGTCGC GGTCGCTTCG AACAGGCCGA AGGTGGCACG
CTGTTCCTCG ACGAAATCGG CGATATGCCA TTTGATTTGC AGACGCGCCT GCTGCGTGTA
CTTTCGGATG GAAATTTCTA TCGGGTGGGG GGGCATAATC CGTTGCGCGC GAACGTGCGC
GTCATCGCCG CCACGCACCA GAACCTCGAG ACGCGCGTCA AGGAAGGGCT GTTCCGCGAG
GATTTGTTCC ACCGTCTCAA CGTGATTCGC CTGCGCCTGC CGCCGCTGCG CGAGCGTCCG
GAGGACATCA CGCTGCTGGC CCGCCATTTC CTGCAGAAGA GCGCGAAGGA GCTTGGCGTC
GAAACCAAGC GCATGTCCGA TGACGCACTG GCCTACGTCA GCACGCTGCC GTTCCCCGGC
AATGTGCGCC AGCTCGAGAA CCTCTGCAAC TGGCTGACCG TCATGGCGCC GGCGCAGACC
ATCGAAGTAA AGGATTTCCC GCGCGAAATG ATCGAGGTGG GGTACGGCGA AAGCAGTGTG
TCGCCGATGC GTTCGCCGGG CGAGTCGAGG TCGTCGGGAG AGTACGAGGC TGCGGAAGTT
TCTGACTACG GCACGCATGC CACGGGCGAG GGCGACACGA TGGTCGCCAC AAGACCACCC
ATGGCCTCTT CGGCTACGTC GTCGGCGTCG GCATTTGCGG CGAGCGCCGT TTCGGCAAGC
TGGGAAACGC TGCTGGCTGG CGAGGCAAAG TCGATGCTCG AATCGGGGCA GCCCGAAGTC
ATGGATGCGC TGACGCGGCG ATTCGAGAAA GCGGTGCTGG AAGCCGCGCT CGGTGTCACG
CGCGGACGTC GCGTGGAGGC CGCGACGCGG CTCGGCATCG GTCGGAACAC CATTACTCGC
AAGCTGCAGG AGCTTGGGTT CGACTGA
|
|---|
| Protein sequence | MTPSRQATHM KPIWIVDDDQ SIRWVLEKAL ARESLLSRSF TNVRDVLAAL EEDEPQVLIS
DIRMPGGSGL DLLQAIKARH PGLPVIVMTA YSDLDSAVAA FQGGAFEYLA KPFDVDKAVE
LIRRALEESL REEEMDDRLV DAPEILGQAP AMQDVFRAIG RLSQSNVTVM ITGESGTGKE
LVARALHKHS PRANGPFIAL NTAAIPKDLL ESELFGHERG AFTGAQTMRR GRFEQAEGGT
LFLDEIGDMP FDLQTRLLRV LSDGNFYRVG GHNPLRANVR VIAATHQNLE TRVKEGLFRE
DLFHRLNVIR LRLPPLRERP EDITLLARHF LQKSAKELGV ETKRMSDDAL AYVSTLPFPG
NVRQLENLCN WLTVMAPAQT IEVKDFPREM IEVGYGESSV SPMRSPGESR SSGEYEAAEV
SDYGTHATGE GDTMVATRPP MASSATSSAS AFAASAVSAS WETLLAGEAK SMLESGQPEV
MDALTRRFEK AVLEAALGVT RGRRVEAATR LGIGRNTITR KLQELGFD
|
|---|
| |