| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2044 |
|---|
| Symbol | |
|---|
| ID | 4038851 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 2210881 |
|---|
| End bp | 2212329 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637977429 |
|---|
| Product | cbb3-type cytochrome c oxidase subunit I |
|---|
| Protein accession | YP_584192 |
|---|
| Protein GI | 94310982 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
|---|
| TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0265889 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTCA CCACCGCGTC CTCACGCGCC GACACCTTCA ACTATGGAGT CGTGCGGCAG
TTTGCCGTCA TGACCGTGGT TTGGGGGATC GTTGGCATGG CCGTAGGCGT TCTGCTTGCG
GCGCAATTGA TCTGGCCGGA TCTGAATTTC AATACACCGT GGTTATCGTT CGGTCGCTTG
CGACCGCTTC ACACCAATGC GGTGATCTTT GCATTTGGCG GTAGCGCGCT GTTCGCCACG
TCGTACTACG TCGTGCAACG CACCTGCCAG GCCCGGCTGT TCTGCGGCCC GCTGGCGTCG
TTCACATTCT GGGGCTGGCA AGCCATCATC ATCGCGGCGG TGATCACGCT GCCGATGGGC
ATTACTTCTT CCAAGGAGTA TGCCGAGCTC GAATGGCCGA TCGATATCCT GATCACGCTG
GTCTGGGTTG CCTACGCGGT GGTGTTCTTC GGCACGATCA TCAAGCGCAA GACCCGCCAT
ATCTACGTGG CGAACTGGTT CTTCGGCGCT TACATCCTGA CGATCGCCAT CCTCCATATC
GTCAACAACA TCGAAATGCC GGTGTCGATG TGGAAGTCGT ACTCCGCCTA TGCAGGCGTG
CAGGACGCGA TGATCCAGTG GTGGTACGGC CACAACGCGG TGGGCTTCTT CCTGACCACG
AGCTTCCTGG GGATGATGTA CTACTTCATC CCGAAGCAGG CAGAGCGTCC GATCTACTCG
TATCGCCTGT CGATCGTCCA CTTCTGGGCG CTCAACTTCA CGTACATGTG GGCGGGTCCG
CACCACCTGC AGTACACCTC GCTGCCTGAC TGGGCGCAGT CGCTGGGCAT GGTGTTCTCG
CTGATCCTGC TGGCTCCGTC GTGGGGCGGC ATGATCAACG GGATCATGAC GCTGTCCGGT
GCCTGGCACA AGCTGCGTAC CGATCCGATT CTCAAGTTCC TGGTGGTGGC GCTGTCGTTC
TACGGCATGG CCACGTTCGA GGGCTCGATG ATGTCGATCA AGACGGTGAA CGCGCTGTCG
CACTACACGG ACTGGACGAT CGGCCACGTG CACTCGGGTG CCCTGGGCTG GGTCGCGATG
ATCTCGATTG GCTCGCTTTA CTACCTGATT CCGCGCCTGT TCGGGGAGAA GGAGATGTAC
AGCACGCGCC TGATCGAGTG GCACTTCTGG ATTGCGACGA TCGGCGTCGT GCTCTACATC
GCCTCGATGT GGATCGCCGG TGTGATGGAA GGTCTGATGT GGCGCGCCAC GCAGCCTGAC
GGCACGCTGA CCTATGCGTT CGTCGAAGCG GTCAAGGCAA AGTATCCGTT CTATCTGATC
CGTCTGCTGG GTGGCCTGTG CTTCCTGAGC GGCATGATCC TCATGGCTTA CAACGTGGCA
CGTACCATCA TTGGCAAGCC TGCGGTTGAC GCTCCGATTC CGGCCAACCT GCCGGCTTCC
GCCCACTGA
|
|---|
| Protein sequence | MAVTTASSRA DTFNYGVVRQ FAVMTVVWGI VGMAVGVLLA AQLIWPDLNF NTPWLSFGRL
RPLHTNAVIF AFGGSALFAT SYYVVQRTCQ ARLFCGPLAS FTFWGWQAII IAAVITLPMG
ITSSKEYAEL EWPIDILITL VWVAYAVVFF GTIIKRKTRH IYVANWFFGA YILTIAILHI
VNNIEMPVSM WKSYSAYAGV QDAMIQWWYG HNAVGFFLTT SFLGMMYYFI PKQAERPIYS
YRLSIVHFWA LNFTYMWAGP HHLQYTSLPD WAQSLGMVFS LILLAPSWGG MINGIMTLSG
AWHKLRTDPI LKFLVVALSF YGMATFEGSM MSIKTVNALS HYTDWTIGHV HSGALGWVAM
ISIGSLYYLI PRLFGEKEMY STRLIEWHFW IATIGVVLYI ASMWIAGVME GLMWRATQPD
GTLTYAFVEA VKAKYPFYLI RLLGGLCFLS GMILMAYNVA RTIIGKPAVD APIPANLPAS
AH
|
|---|
| |