Gene Rmet_2034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_2034 
Symbol 
ID4038841 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp2201993 
End bp2203888 
Gene Length1896 bp 
Protein Length631 aa 
Translation table11 
GC content68% 
IMG OID637977419 
Productribosomal large subunit pseudouridine synthase B 
Protein accessionYP_584182 
Protein GI94310972 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.209025 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCTGATT CCGCTGAGCA AGACGTCCGC CAGCCGGACG TGCCGGGCGA TACCGGCGCA 
GCCCCCGAGG GTAACGGCGC CGAAGGCGCG CCCCGCCGCA AGGGGCTGCG CCGCGGCCTG
CGCAATCTAG TGGCTTCCCG TCGCCAGGCG GGGCAGGACC GCGATGGCCG GGAAACGGGG
CGCGACGATG TCGAACCCTC GTCGACTGGC GAAAGCGGCG ATGCTTCGCC GGCCGCCGCC
CCCGCGCGTG GCCGTGGGCG TCGCAAGCCG GCGCCGGCCG CCGACACGCA GGCAGTTGCT
GGTGCCGAGG AGATGGGTGG CGACGCGCAA GCTGGCCAGC CGCGATCGGA TCAGCCAGCG
CAGGGGGCTC GCAAGCGCCG TCAGCAGCCG CAACGCAAGG CAGCGCTGGT TGATGGTGAC
AACAAGCCAA CCTCACAACA GCCGGGCCGC CGCAACAAGG GTGGTCAGCG CAAGGGTCAA
CAGCCTGGCG GCAAGCCGGG TGCTGACAGG GGTGACCAGC GTGTCGAGCA GCGCCAGGGC
GACAAGCCCG GTCGGCAAGC CGGCAAGGGC GGCGCGAAGA CCGCTGCCGG TGGCGAGGAT
CTGTTCCGTT TCGTGATTTC CGAGCAGTTC GATCAGGAAG ACACGATTGT GCCGCGCACC
AAGGCCAAGC CGGTGCGCGA ACTGTCCGCA GACGACGACG CGCCCAAACT GCACAAGGTG
CTGGCGGAGG GTGGACTTGG TTCACGCCGC GAGATGGAAG AACTGATCCT GCAGGGGCGT
GTGTCGGTCA ATGGCCTGCC TGCCCATATC GGCCAGCGTA TTCTGCCGAC CGACCAGGTC
CGCGTGAACG GCAAGCTGAT TCACCGCAAG GTGACGACCA AGCCTCCACG GGTGCTGCTC
TATCACAAGC CCTCCGGCGA GATCGTCAGC CAGTCGGATC CGGAAGGCCG TCCGACCGTT
TTCGACAGTC TCCCGCGCAT CAAGAACGGC AAGTGGGTCG CGGTTGGTCG CCTCGACTTC
AATACCGAAG GGCTGCTGAT TTTCACCACG TCGGGTGATA TCGCGAACCG TTTCATGCAC
CCGCGCTATG GCGTGGAGCG CGAGTACGCA GTGCGCACGC TGGGCGAACT GGCCGAAGCC
GATCGTCAGC GGCTGCTGCA TGGCATTCAG CTCGATGATG GCGAGGCAAA CTTCCTGCGG
ATCGCCGATG GCGGTGGCGA GGGCGTGAAC CAGTGGTATC ACGTGGCGCT GACCGAAGGC
CGTAACCGCG AAGTGCGTCG CATGTTCGAG GCCGTCGGTC TGACCGTGTC GCGCCTGATC
CGCACGCGTT ATGGTCAGTT CCTGCTGCCG CGCGGCTTGA AGCGCGGTCG CTGGCAGGAA
TTGGACCCGA CGGATGTGCG CGGCCTGATG GCCAACATTG GACTGAAGGC GCCGTCCAAG
GAAGCACAGA GTGGCGGCAA GGGTGTGACG AAGGTCGGCG GCCGCAAGCA GCGCGAAGAA
GCGGCGCTGG CGGGCATGCC GATGCACACC GGCATGGATG GTCTGCCGCG CTACGAGAAG
AGCGGTGGCC GGGGTGGTAA TGCTGGGGGC GCGGGCCGTG GTCAGCCTGA TCCGATGCAG
ACCTCGATGG GATACATTCC GTCCGGCCCT GCGCCGCTGA CGTCGCATAC GACCAAGTTT
GGCGGCGGGA TGGGCGGCGG CCTGCGGGGC CCTGGCGCCG GTGGTGGTCG CGGCGGCGGG
CGGGGCGGCA AGGCCGGAAA CGCTGGCAAT GCGGGCAACG CAGGTGGCAA TCGCCAGCGT
CGCGGCGGTG GCGAGGTCAA TGGAAATGTA ATGCCAAAGG CTGCCAAGGG TGCGGGAGGC
GGTAGTCGCC GACCGCGCGG CCGAGGTCAG CGTTGA
 
Protein sequence
MSDSAEQDVR QPDVPGDTGA APEGNGAEGA PRRKGLRRGL RNLVASRRQA GQDRDGRETG 
RDDVEPSSTG ESGDASPAAA PARGRGRRKP APAADTQAVA GAEEMGGDAQ AGQPRSDQPA
QGARKRRQQP QRKAALVDGD NKPTSQQPGR RNKGGQRKGQ QPGGKPGADR GDQRVEQRQG
DKPGRQAGKG GAKTAAGGED LFRFVISEQF DQEDTIVPRT KAKPVRELSA DDDAPKLHKV
LAEGGLGSRR EMEELILQGR VSVNGLPAHI GQRILPTDQV RVNGKLIHRK VTTKPPRVLL
YHKPSGEIVS QSDPEGRPTV FDSLPRIKNG KWVAVGRLDF NTEGLLIFTT SGDIANRFMH
PRYGVEREYA VRTLGELAEA DRQRLLHGIQ LDDGEANFLR IADGGGEGVN QWYHVALTEG
RNREVRRMFE AVGLTVSRLI RTRYGQFLLP RGLKRGRWQE LDPTDVRGLM ANIGLKAPSK
EAQSGGKGVT KVGGRKQREE AALAGMPMHT GMDGLPRYEK SGGRGGNAGG AGRGQPDPMQ
TSMGYIPSGP APLTSHTTKF GGGMGGGLRG PGAGGGRGGG RGGKAGNAGN AGNAGGNRQR
RGGGEVNGNV MPKAAKGAGG GSRRPRGRGQ R