Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_2034 |
Symbol | |
ID | 4038841 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | - |
Start bp | 2201993 |
End bp | 2203888 |
Gene Length | 1896 bp |
Protein Length | 631 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637977419 |
Product | ribosomal large subunit pseudouridine synthase B |
Protein accession | YP_584182 |
Protein GI | 94310972 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.209025 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGTCTGATT CCGCTGAGCA AGACGTCCGC CAGCCGGACG TGCCGGGCGA TACCGGCGCA GCCCCCGAGG GTAACGGCGC CGAAGGCGCG CCCCGCCGCA AGGGGCTGCG CCGCGGCCTG CGCAATCTAG TGGCTTCCCG TCGCCAGGCG GGGCAGGACC GCGATGGCCG GGAAACGGGG CGCGACGATG TCGAACCCTC GTCGACTGGC GAAAGCGGCG ATGCTTCGCC GGCCGCCGCC CCCGCGCGTG GCCGTGGGCG TCGCAAGCCG GCGCCGGCCG CCGACACGCA GGCAGTTGCT GGTGCCGAGG AGATGGGTGG CGACGCGCAA GCTGGCCAGC CGCGATCGGA TCAGCCAGCG CAGGGGGCTC GCAAGCGCCG TCAGCAGCCG CAACGCAAGG CAGCGCTGGT TGATGGTGAC AACAAGCCAA CCTCACAACA GCCGGGCCGC CGCAACAAGG GTGGTCAGCG CAAGGGTCAA CAGCCTGGCG GCAAGCCGGG TGCTGACAGG GGTGACCAGC GTGTCGAGCA GCGCCAGGGC GACAAGCCCG GTCGGCAAGC CGGCAAGGGC GGCGCGAAGA CCGCTGCCGG TGGCGAGGAT CTGTTCCGTT TCGTGATTTC CGAGCAGTTC GATCAGGAAG ACACGATTGT GCCGCGCACC AAGGCCAAGC CGGTGCGCGA ACTGTCCGCA GACGACGACG CGCCCAAACT GCACAAGGTG CTGGCGGAGG GTGGACTTGG TTCACGCCGC GAGATGGAAG AACTGATCCT GCAGGGGCGT GTGTCGGTCA ATGGCCTGCC TGCCCATATC GGCCAGCGTA TTCTGCCGAC CGACCAGGTC CGCGTGAACG GCAAGCTGAT TCACCGCAAG GTGACGACCA AGCCTCCACG GGTGCTGCTC TATCACAAGC CCTCCGGCGA GATCGTCAGC CAGTCGGATC CGGAAGGCCG TCCGACCGTT TTCGACAGTC TCCCGCGCAT CAAGAACGGC AAGTGGGTCG CGGTTGGTCG CCTCGACTTC AATACCGAAG GGCTGCTGAT TTTCACCACG TCGGGTGATA TCGCGAACCG TTTCATGCAC CCGCGCTATG GCGTGGAGCG CGAGTACGCA GTGCGCACGC TGGGCGAACT GGCCGAAGCC GATCGTCAGC GGCTGCTGCA TGGCATTCAG CTCGATGATG GCGAGGCAAA CTTCCTGCGG ATCGCCGATG GCGGTGGCGA GGGCGTGAAC CAGTGGTATC ACGTGGCGCT GACCGAAGGC CGTAACCGCG AAGTGCGTCG CATGTTCGAG GCCGTCGGTC TGACCGTGTC GCGCCTGATC CGCACGCGTT ATGGTCAGTT CCTGCTGCCG CGCGGCTTGA AGCGCGGTCG CTGGCAGGAA TTGGACCCGA CGGATGTGCG CGGCCTGATG GCCAACATTG GACTGAAGGC GCCGTCCAAG GAAGCACAGA GTGGCGGCAA GGGTGTGACG AAGGTCGGCG GCCGCAAGCA GCGCGAAGAA GCGGCGCTGG CGGGCATGCC GATGCACACC GGCATGGATG GTCTGCCGCG CTACGAGAAG AGCGGTGGCC GGGGTGGTAA TGCTGGGGGC GCGGGCCGTG GTCAGCCTGA TCCGATGCAG ACCTCGATGG GATACATTCC GTCCGGCCCT GCGCCGCTGA CGTCGCATAC GACCAAGTTT GGCGGCGGGA TGGGCGGCGG CCTGCGGGGC CCTGGCGCCG GTGGTGGTCG CGGCGGCGGG CGGGGCGGCA AGGCCGGAAA CGCTGGCAAT GCGGGCAACG CAGGTGGCAA TCGCCAGCGT CGCGGCGGTG GCGAGGTCAA TGGAAATGTA ATGCCAAAGG CTGCCAAGGG TGCGGGAGGC GGTAGTCGCC GACCGCGCGG CCGAGGTCAG CGTTGA
|
Protein sequence | MSDSAEQDVR QPDVPGDTGA APEGNGAEGA PRRKGLRRGL RNLVASRRQA GQDRDGRETG RDDVEPSSTG ESGDASPAAA PARGRGRRKP APAADTQAVA GAEEMGGDAQ AGQPRSDQPA QGARKRRQQP QRKAALVDGD NKPTSQQPGR RNKGGQRKGQ QPGGKPGADR GDQRVEQRQG DKPGRQAGKG GAKTAAGGED LFRFVISEQF DQEDTIVPRT KAKPVRELSA DDDAPKLHKV LAEGGLGSRR EMEELILQGR VSVNGLPAHI GQRILPTDQV RVNGKLIHRK VTTKPPRVLL YHKPSGEIVS QSDPEGRPTV FDSLPRIKNG KWVAVGRLDF NTEGLLIFTT SGDIANRFMH PRYGVEREYA VRTLGELAEA DRQRLLHGIQ LDDGEANFLR IADGGGEGVN QWYHVALTEG RNREVRRMFE AVGLTVSRLI RTRYGQFLLP RGLKRGRWQE LDPTDVRGLM ANIGLKAPSK EAQSGGKGVT KVGGRKQREE AALAGMPMHT GMDGLPRYEK SGGRGGNAGG AGRGQPDPMQ TSMGYIPSGP APLTSHTTKF GGGMGGGLRG PGAGGGRGGG RGGKAGNAGN AGNAGGNRQR RGGGEVNGNV MPKAAKGAGG GSRRPRGRGQ R
|
| |