Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_2027 |
Symbol | |
ID | 4038834 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | + |
Start bp | 2192292 |
End bp | 2193533 |
Gene Length | 1242 bp |
Protein Length | 413 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637977412 |
Product | secretion protein HlyD |
Protein accession | YP_584175 |
Protein GI | 94310965 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.294658 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.169998 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAACA ACCAGCAATC GGCCAGCCAG AAACCCGCTC CAACCGGTGA CAGCAAGCGC AAGCGCCTGC TCACGACGCT CACTGCCGCG ATCGTGGTGG CCGGCGTCGG CTATGGCCTG TACTGGGGCC TCTACGCCCG GCACTTCGAA AGCACCGATG ATGCCTATGT GGCCGGCAAC GTGGTCCAGG TGACCCCGCT GGTGGGCGGC ACTGTGGTGT CGATCGCCGC CGACGACACG CAACTCGTCA CCGCTGGCCA GCCGCTGATC CAGCTCGACC GCGCCGACAC CCAGGTAGCC ATGGAACAGG CCGAAGCCCA ACTCGCGCAA GCCGTGCGTG AAGTGCGCAC GCTCTATGTG AACAACGCTT CGCTGGCTGC GAACGTGGCA TTGCGCGATG CCGATGTGGC CAAGGCACGC GATGACCTGC GCCGCCGCCA GGCGATTGCC GGCTCGGGCG CGGTCTCGAG CGAGGAAATC TCGCACGCCC AGACCGCACT GAAAGCAGCC GAGTCGGCGC TGCTTGCCTC GAAGGAGCAA CTCGCGTCGA ATCAGGTATT GACCGACCAG ACCACCGTGG AAAAGCACCC GAACGTGCAG CGCGCCGCCG CCAATCTGCG TTCGGCCTAC CTGTCGTTCG CCCGCTCCAC ACTGCCGGCG CCGGTCACCG GCTACGTGGC CAAGCGCTCG GTACAGGTTG GCCAGCGCGT GGCCGCCGGC ACACCGCTGA TGGCCGTGGT ACCGCTCGAT CAGGTCTGGG TTGATGCCAA CTTCAAGGAA GTGCAGATCA CCCATATGCG CATCGGCCAG CCGGTGGAAC TGGAAGCTGA CGTCTATGGC TCGAAGGTGA AGTACCAGGG CCATGTCGAG GGCTTCTCGG CCGGTACCGG GGCGGCGTTC TCGCTCCTGC CCGCGCAGAA CGCCACCGGC AACTGGATCA AGGTGGTGCA GCGCCTGCCG GTGCGTATCG CGCTGGACGC CCAACAACTC AAGGAGCATC CGCTGCGTGT CGGCCTGTCG ATGAACGTTA CCGTTGACGT GCGCAAGGAA GAAGGCGCCG CGATGGTCAC CGCCACCAAC GCCCGGCCTC TGCAGACGGA CGTCTATGAC AAGGTGGCGC AGGACGCCGA CGAACTGATC GCCCGCATCA TCTCCGTCAA TAACGGCGGC CGCACGCCGG CACCGGCGGC GCCGGGCGGC GCCAGCGCGG CGCGCGCAGC CGCCAAGCCT GCCAACACCT GA
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Protein sequence | MSNNQQSASQ KPAPTGDSKR KRLLTTLTAA IVVAGVGYGL YWGLYARHFE STDDAYVAGN VVQVTPLVGG TVVSIAADDT QLVTAGQPLI QLDRADTQVA MEQAEAQLAQ AVREVRTLYV NNASLAANVA LRDADVAKAR DDLRRRQAIA GSGAVSSEEI SHAQTALKAA ESALLASKEQ LASNQVLTDQ TTVEKHPNVQ RAAANLRSAY LSFARSTLPA PVTGYVAKRS VQVGQRVAAG TPLMAVVPLD QVWVDANFKE VQITHMRIGQ PVELEADVYG SKVKYQGHVE GFSAGTGAAF SLLPAQNATG NWIKVVQRLP VRIALDAQQL KEHPLRVGLS MNVTVDVRKE EGAAMVTATN ARPLQTDVYD KVAQDADELI ARIISVNNGG RTPAPAAPGG ASAARAAAKP ANT
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