Gene Rmet_2027 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_2027 
Symbol 
ID4038834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp2192292 
End bp2193533 
Gene Length1242 bp 
Protein Length413 aa 
Translation table11 
GC content67% 
IMG OID637977412 
Productsecretion protein HlyD 
Protein accessionYP_584175 
Protein GI94310965 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR00998] efflux pump membrane protein (multidrug resistance protein A) 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.294658 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.169998 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAACA ACCAGCAATC GGCCAGCCAG AAACCCGCTC CAACCGGTGA CAGCAAGCGC 
AAGCGCCTGC TCACGACGCT CACTGCCGCG ATCGTGGTGG CCGGCGTCGG CTATGGCCTG
TACTGGGGCC TCTACGCCCG GCACTTCGAA AGCACCGATG ATGCCTATGT GGCCGGCAAC
GTGGTCCAGG TGACCCCGCT GGTGGGCGGC ACTGTGGTGT CGATCGCCGC CGACGACACG
CAACTCGTCA CCGCTGGCCA GCCGCTGATC CAGCTCGACC GCGCCGACAC CCAGGTAGCC
ATGGAACAGG CCGAAGCCCA ACTCGCGCAA GCCGTGCGTG AAGTGCGCAC GCTCTATGTG
AACAACGCTT CGCTGGCTGC GAACGTGGCA TTGCGCGATG CCGATGTGGC CAAGGCACGC
GATGACCTGC GCCGCCGCCA GGCGATTGCC GGCTCGGGCG CGGTCTCGAG CGAGGAAATC
TCGCACGCCC AGACCGCACT GAAAGCAGCC GAGTCGGCGC TGCTTGCCTC GAAGGAGCAA
CTCGCGTCGA ATCAGGTATT GACCGACCAG ACCACCGTGG AAAAGCACCC GAACGTGCAG
CGCGCCGCCG CCAATCTGCG TTCGGCCTAC CTGTCGTTCG CCCGCTCCAC ACTGCCGGCG
CCGGTCACCG GCTACGTGGC CAAGCGCTCG GTACAGGTTG GCCAGCGCGT GGCCGCCGGC
ACACCGCTGA TGGCCGTGGT ACCGCTCGAT CAGGTCTGGG TTGATGCCAA CTTCAAGGAA
GTGCAGATCA CCCATATGCG CATCGGCCAG CCGGTGGAAC TGGAAGCTGA CGTCTATGGC
TCGAAGGTGA AGTACCAGGG CCATGTCGAG GGCTTCTCGG CCGGTACCGG GGCGGCGTTC
TCGCTCCTGC CCGCGCAGAA CGCCACCGGC AACTGGATCA AGGTGGTGCA GCGCCTGCCG
GTGCGTATCG CGCTGGACGC CCAACAACTC AAGGAGCATC CGCTGCGTGT CGGCCTGTCG
ATGAACGTTA CCGTTGACGT GCGCAAGGAA GAAGGCGCCG CGATGGTCAC CGCCACCAAC
GCCCGGCCTC TGCAGACGGA CGTCTATGAC AAGGTGGCGC AGGACGCCGA CGAACTGATC
GCCCGCATCA TCTCCGTCAA TAACGGCGGC CGCACGCCGG CACCGGCGGC GCCGGGCGGC
GCCAGCGCGG CGCGCGCAGC CGCCAAGCCT GCCAACACCT GA
 
Protein sequence
MSNNQQSASQ KPAPTGDSKR KRLLTTLTAA IVVAGVGYGL YWGLYARHFE STDDAYVAGN 
VVQVTPLVGG TVVSIAADDT QLVTAGQPLI QLDRADTQVA MEQAEAQLAQ AVREVRTLYV
NNASLAANVA LRDADVAKAR DDLRRRQAIA GSGAVSSEEI SHAQTALKAA ESALLASKEQ
LASNQVLTDQ TTVEKHPNVQ RAAANLRSAY LSFARSTLPA PVTGYVAKRS VQVGQRVAAG
TPLMAVVPLD QVWVDANFKE VQITHMRIGQ PVELEADVYG SKVKYQGHVE GFSAGTGAAF
SLLPAQNATG NWIKVVQRLP VRIALDAQQL KEHPLRVGLS MNVTVDVRKE EGAAMVTATN
ARPLQTDVYD KVAQDADELI ARIISVNNGG RTPAPAAPGG ASAARAAAKP ANT