| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2026 |
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| Symbol | |
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| ID | 4038833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 2190686 |
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| End bp | 2192245 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637977411 |
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| Product | RND efflux system outer membrane lipoprotein NodT |
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| Protein accession | YP_584174 |
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| Protein GI | 94310964 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.192262 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCCC TTCCCGTTGA AGCAAGATCT GGTCACAGTC ACACAATGAA TCTCTCCCCT
TCCTCCACCC TCGGCCGCAA TGGCGTTGCG GCCCGCACCG GCAGCCTGGC CTTGACGGTC
CTGGCTGCCG CTGTCATTTC CGGCTGTGCC GCGTTGGGCA ATTCGCACAG CACGCAGACG
TTGGCCGAAC CCGGCACGAT GGCCTCGCCG CAGACGTTCA CCGCTGATCA CGGCCAATGG
CCGTCACAGG ACTGGGTCGA CCAGTTCCAT GATCCGCAAC TGCGCGCACT GGCCGACGAA
GCCGTCAAGG ACAACCCGAA CCTGCAGGTC GCGCTGGCAC GCCTGGAGGC CTCGCGCGCA
ATGGCCGATG CCACGCGCGC GGCGCTGTAC CCGAGCGTCG ATTTCGAAGG CAGCATCATT
CGCCAGCGCT TCTCGGCCAC CGACCTCTTC ACCGGCACGC CCCTCGCCGG CTCCTGGCAG
AACCAGTCCC GCCTGCAGTT CGGGCTGTCT TGGGATCTCG ACTTCTGGGG CAAGAATCGC
GACGCGCTCG AAGCCGCCCT GTCGGATGAC CGCTCAATGG AGGCTGAGAG CCAGGCCGCA
CGCCTGATGC TCACCACGTC GATCGCACGC AGCTACAACC GACTGGCCGC GCTCTTCGCG
CAGCGAGACG TTGCCGAACG TGCCATCGCC CAGCGCCGGG ACCTTACCGA TCTGTCCCGT
CAGCGGCTGG CCGCCGGCCT CGACACCCAA GTGGAAACCA CACAGGCCCG CGCCACAGTT
GCATCGGCGC AAACGGAACT GCAGGCCATC GACGAGGAAA TCGCCCTGGC GCGCAACCAG
ATCGCCGCGC TGCTCGGCAA GGGCCCGGAC CGCGGCCTGC AGATCACGCG CCCGACGCTG
CTGGCCAACC CGACGCCACA ATTGCCGGAC GACCTGACGA TCGGCCTGAT CGGCCGCCGC
CCCGACCTTG TTGCCGCCCG CTGGCGCGTG GAGGCCACGT CCAAGGACAT CAGCGTCGCC
AAGAAGGAAT TCCTGCCTGA CGTGACACTG ACGGCGTTCG CCGGCCTGGC GTCGCTGGAC
CCCGCCAACC TGTTGATGAG TGTCAGCCGC ACGTTCGGCT TCGGCCCGAC GCTGCGCCTG
CCGATCTTCG AAGGTGGCCG CCTGCGCGCC AACCTCAAGG GCAAGTACGC GCAGTACGAC
ATCGCCGTGG CCAGCTATAA CCAGACGCTG GTCGACGCGT TGCGCGAGGC CGCCGATACG
GTGATCAGCA TCCGCAGCGT TGATCAGCAG ATCAAGACGC AGCGCGAAGC ACTCGAACTG
GCCGAGCACG CGTACTCGCT GGCCACCACG CGCTACAAGG CCGGCCTCGG CACGCAGTTG
ACCGTGTTGA ACGCGGAGAG CACCGTGCTG CAGCAACGCC GTCAGGCGAC AGATCTGCAG
GCGCGCCGCC TGGATCTGCA GATGGGCCTG ATCAAGGCTC TCGGCGGCGG CTATCACGAG
GAAGCCGACG AAAAAGCCGG CGCCGTAGAA CAGAACACGG AAAAGGGCAC CCGGGGCTGA
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| Protein sequence | MSALPVEARS GHSHTMNLSP SSTLGRNGVA ARTGSLALTV LAAAVISGCA ALGNSHSTQT
LAEPGTMASP QTFTADHGQW PSQDWVDQFH DPQLRALADE AVKDNPNLQV ALARLEASRA
MADATRAALY PSVDFEGSII RQRFSATDLF TGTPLAGSWQ NQSRLQFGLS WDLDFWGKNR
DALEAALSDD RSMEAESQAA RLMLTTSIAR SYNRLAALFA QRDVAERAIA QRRDLTDLSR
QRLAAGLDTQ VETTQARATV ASAQTELQAI DEEIALARNQ IAALLGKGPD RGLQITRPTL
LANPTPQLPD DLTIGLIGRR PDLVAARWRV EATSKDISVA KKEFLPDVTL TAFAGLASLD
PANLLMSVSR TFGFGPTLRL PIFEGGRLRA NLKGKYAQYD IAVASYNQTL VDALREAADT
VISIRSVDQQ IKTQREALEL AEHAYSLATT RYKAGLGTQL TVLNAESTVL QQRRQATDLQ
ARRLDLQMGL IKALGGGYHE EADEKAGAVE QNTEKGTRG
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