Gene Rmet_1953 details

Gene Information

• Locus tag: Rmet_1953
• Symbol: ispF
• ID: 4038758
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cupriavidus metallidurans CH34
• Kingdom: Bacteria
• Replicon accession: NC_007973
• Strand: -
• Start bp: 2123485
• End bp: 2123991
• Gene Length: 507 bp
• Protein Length: 168 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637977336
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_584101
• Protein GI: 94310891
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 0.935405
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGAACCCGT TCGATATCCG CATTGGCCAA GGCTATGACG TTCACGCCCT GGTGCCGGGC 
CGCAAGCTGA TCCTCGGTGG CGTGGACATT CCACACGATC GCGGACTGCT CGGTCATTCC 
GATGCCGACG CGCTGCTGCA TGCCGTGACA GATGCGTTGT TCGGTGCCGC GGCGCTGGGC 
GATATTGGTC GCCACTTTCC CGATACCGAT CCGAATTTCG CTGGCGCCGA CAGCCGGGTA 
TTGCTGCGTG AGGCGGTCCG TCGTGTGCGC GAAGCCGGTT ACGAGATCGG CAACGTCGAC 
GCCACGGTCA TCGCGCAGAA GCCCAAGCTG GCGCCGCATA TCAGCGGCAT GGTGGCCAAT 
CTCGCGGAAG ATCTCGGCCT GCCCGTCACG CGCTGCAACG TGAAGGCGAA GACCAACGAG 
AAACTGGGCT TCGAAGGAAA GGAGGAGGGG ATCGTGGCGC AGGCGGCGGT ACTGATCTAC 
CGCCGCAACG GCGACGCCCA GGACTGA 

 

Protein sequence

MNPFDIRIGQ GYDVHALVPG RKLILGGVDI PHDRGLLGHS DADALLHAVT DALFGAAALG 
DIGRHFPDTD PNFAGADSRV LLREAVRRVR EAGYEIGNVD ATVIAQKPKL APHISGMVAN 
LAEDLGLPVT RCNVKAKTNE KLGFEGKEEG IVAQAAVLIY RRNGDAQD