| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1791 |
|---|
| Symbol | |
|---|
| ID | 4038593 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1943011 |
|---|
| End bp | 1944219 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637977171 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_583939 |
|---|
| Protein GI | 94310729 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCTGATC CAGACCTGAG CAAGCTGAAA ATCGATCGTA GCGCCATGGC GCCCGCCCAG
CGCCGCCGCC GTCCCTGGCT GCGCTACGCG ATCATCGCGG TGGTGATCCT CGTGCTGGCC
GGCATCGGCC TGAAGCTGGC CGGGCCCCAG ACCGTGGAAA CGGCGACGGT CACTTCGGCA
TACCCGTCGC AAAACTTCAC GCTGCTCAAC GCTACGGGTT ACGTGGTGCC ACAGCGCAAG
GCGGCGGTAG CATCTAAGGC GCAGGGCCGG CTGGAGTGGC TTGGTGTGCT GGAAGGCTCC
CGCGTCAAGA AGGATGAGAT CATCGCGCGG ATCGAAAGCC GCGACGTCGA GGCGTCCGCC
GCGCAGGCGC GAGCCCAGGT CCAGGTAGCC GAAGCCAATC TGGCATTGCA ACAGGCCGAA
CTGCGTGACG CCGATGTCAA TCTGCGCCGG TCGAAGGAAC TGCTTGCGCC GGCAGCGATT
TCCCAACAGC AATACGATTC CGATCTGGCG CGCTACAACA AGGCGCGCGC GTCGATCAGC
AATTCGGAGG CGTCGATCAC CTCGGCCAAG GCCAATGCCC GCGCCGCTGA AGTGGCGGTG
GAGCAGACCG TGGTTCGCGC GCCGTTCGAC GGTGTGGTGC TGATCAAGCA TGCCAACGTC
GGCGACAACA TTACCCCGTT CTCGGCGGCC GCCGACACCA AGGGTGCGAT CGTGACCATC
GCCGACATGT CCACGCTCGA AGTGGAAGCG GACGTAGCGG AATCCAATAT CGCGAAGATC
ACGGTCGAGC AGCCCTGCGA GGTTCTGCTC GATGCCCTGC CGAACCTGCG CCAGGAGGGC
CGCGTGTCAC GCATTGTCCC GACCGTCGAC CGGTCAAAGG CGACCGTGCT GGTCAAGATC
CGCTTCGTCG ATCGCGACCC GCGCGTGCTG CCGGACATGA GCGCCAAGAT CGCCTTCCTT
TCCAAGCCGG TGGCACCTGC CGAAAACAAG CCTCTGACGG CCATCCAGCC ATCGGCCGTG
GTCGAGCGCG ACGGCAAGCC CGTGGTGTTC CTGGTGCAGG ACGGCAGGGC AAAACAGGCG
CCCGTGACGC GCGGCGCGAA GATCGGCGAA CTGCTGGCCG TTCAGGGCGT GAAGCCGGGC
GATGTGGTGG TGCTAGCGCC GTCCGAGAAG CTGGGCGACG GCAGCAAGGT CTCCGTCGCA
AAGAAGTGA
|
|---|
| Protein sequence | MADPDLSKLK IDRSAMAPAQ RRRRPWLRYA IIAVVILVLA GIGLKLAGPQ TVETATVTSA
YPSQNFTLLN ATGYVVPQRK AAVASKAQGR LEWLGVLEGS RVKKDEIIAR IESRDVEASA
AQARAQVQVA EANLALQQAE LRDADVNLRR SKELLAPAAI SQQQYDSDLA RYNKARASIS
NSEASITSAK ANARAAEVAV EQTVVRAPFD GVVLIKHANV GDNITPFSAA ADTKGAIVTI
ADMSTLEVEA DVAESNIAKI TVEQPCEVLL DALPNLRQEG RVSRIVPTVD RSKATVLVKI
RFVDRDPRVL PDMSAKIAFL SKPVAPAENK PLTAIQPSAV VERDGKPVVF LVQDGRAKQA
PVTRGAKIGE LLAVQGVKPG DVVVLAPSEK LGDGSKVSVA KK
|
|---|
| |