| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1686 |
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| Symbol | |
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| ID | 4038489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 1825603 |
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| End bp | 1827153 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637977068 |
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| Product | RND efflux system outer membrane lipoprotein NodT |
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| Protein accession | YP_583836 |
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| Protein GI | 94310626 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.108559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATGGC TACCACGCAT GTCACTTGCC TTTGCCAGAG AGTTACTCAT CAAGCGTCAA
ATCTCACGTC GCGGACCTGC CGCGGCACTG ATAGTCGTCC CGATCCTGCT TGGCGGCTGC
ATCTCGATGG ATCCCGCCTA CGAGCGTCCT GCTGCACCGG TGCGGACCAC GTGGTCGCCA
GATGCCGCGG CGCCGGCCAT CACGCCAGCC GCCACAATAG GCTGGCGCGA GTTCTACGCG
GACCCCGAGC TTCAGGCACT GATCGGACAA GCGCTCGACA ACAACCGGGA CTTGCGCATC
GGCGCCGCGC GTGTCGCGCA ATCGCTTGCT GCCTACGGCA TTCAGCGGGC GGAGCAATAC
CCGTGGATCG GTGCATCCGC CGATGGAACC CGAGCTCGGG TACCCGGTGA TCTGAATCTG
ACTGGTCGAC CTCTAATAAG CAGCCAATAT CAAGTTGGCG TTGGACTCAG CACGTGGGAG
ATCGATTTCT GGGGACGTAT TCGCAGTCTC AAGGACGCCG CCTTGCAGAA CTATCTGGCG
TCCGATGCTG CGCAACGGGC TGTCACACTG TCGATCATCA CGCAGGTGGC GCAGACGTAT
CTGGCCATTC GCGAGCTCGA CGAACGGATC GCTCTGGCAA AGCAGACCAC GGACACCCGG
GCCGAATCGC TGCGTATCTT CACGCGCCGG GAACAAGTCG GTTCCGCATC CAAGCTGGAG
CTGACCGAAG TCATCACCCT TTACCAGCAG GCCCGGGCAC TGGTCACCCA ACTCGAACAG
GACCGCGCCA CACAGTCTCA TGCGCTGGAG GTTCTGGTGG GCGCGCCGGT CGACGTCAAG
CCGGCCATCG GCCTGGTCAA CGATGCCGAA CTGATGCGCC AGATCGACGC TGGCCTGCCA
TCCGAGCAAC TGGAGAACCG CCCCGACATC GTCTCGGCCG AGCACCAGTT GATGGCTGAA
AACGCAAACA TCGGGGCTGC GCGCGCGGCG TTCTTCCCGC GAGTGACCCT GACCGGTTTC
GCCGGCACGG CCAGTGCGGA CCTGGATGGT CTGTTCCGTG GAGGCAGTGG CGTATGGTCC
TTCGCCCCAA GCATTTCCAT TCCGATCTTC CAGGGCGGAC AGTTGCGTAG CAACCTCGAC
CTCGCGAAAG CGCGGCGCGT GGAGGCGGTA GCCCAATACG AGAAAACCAT CCAGAATGCT
TTCCGCGATG TGGCCGATGC CCTGAGCGCG CAGCGCTGGC TGGCCGAACA GGTCGATATT
CTGCAACTCA CACAGGCGGC ACAGGCCGAA CGCCGGCGAC TGGCGAAACT GCGGTACGAC
AATGGTGCAG CAGCCTTCCT CGAAGTCCTC GATGCCGAGC GCGATCTGCT TGCCATCGAG
CAACAGGCCG TCCAATCGCG CCGCGCCCTG CTTGCCAGCC GCGTCAGCCT GTATGCCGCA
CTGGGCGGTG GCACAGCCGT TGCCTCGCCG CCGGAGGCGG CCGCTCCGGA AGGTGCGCCC
GCCAGTGCAG CGCCTGACGC CAAGCCCTCC ACACCTTCTA CTGCTCGTTA A
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| Protein sequence | MEWLPRMSLA FARELLIKRQ ISRRGPAAAL IVVPILLGGC ISMDPAYERP AAPVRTTWSP
DAAAPAITPA ATIGWREFYA DPELQALIGQ ALDNNRDLRI GAARVAQSLA AYGIQRAEQY
PWIGASADGT RARVPGDLNL TGRPLISSQY QVGVGLSTWE IDFWGRIRSL KDAALQNYLA
SDAAQRAVTL SIITQVAQTY LAIRELDERI ALAKQTTDTR AESLRIFTRR EQVGSASKLE
LTEVITLYQQ ARALVTQLEQ DRATQSHALE VLVGAPVDVK PAIGLVNDAE LMRQIDAGLP
SEQLENRPDI VSAEHQLMAE NANIGAARAA FFPRVTLTGF AGTASADLDG LFRGGSGVWS
FAPSISIPIF QGGQLRSNLD LAKARRVEAV AQYEKTIQNA FRDVADALSA QRWLAEQVDI
LQLTQAAQAE RRRLAKLRYD NGAAAFLEVL DAERDLLAIE QQAVQSRRAL LASRVSLYAA
LGGGTAVASP PEAAAPEGAP ASAAPDAKPS TPSTAR
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