| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1621 |
|---|
| Symbol | |
|---|
| ID | 4038424 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1748372 |
|---|
| End bp | 1749445 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637977005 |
|---|
| Product | histone deacetylase superfamily protein |
|---|
| Protein accession | YP_583773 |
|---|
| Protein GI | 94310563 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCCT TTTTCTCGGA TGACCAGTTG CTGCACCAGC CTCGGCAGTT CATGCGCGCA
GGCCGGCTGT GCGAGCCGAC GGACGTACCG GCTCGCGCCG CCGTGCTCCA GCGGGCGCTC
GACGCCCGTG GTATCGAACT CGTCGCGCCG CCCGACTACG GCCGCGCGCC GCTGGAAACA
GTGCATAGCC CGGCGTACCT CGATTTCCTG ACCAGCGCGT TCGAGCGCTG GATGGCGCAG
GCAACGCCTA CGCTCGAACC GGGCATCGAG GTGCTGCCGA ACCTTTCGCC GTATCACAGC
GGCAAGATCG ACAAGACGCG GCGTGGCCCG TGTCCATCGG GCAGCGTGAT TGCCGAAGCG
GGCTACTACC TCGGGGACCT GAGCTGTCCG CTCGGGCCCC ATAGCTGGCA GTCGATCCTG
CGCTCGGCGC ATAGCGCGGT GGCGGCGGCG CGGCATGTGT GCGCGCCGCA CGACGGCAAT
GGCATGGCCT ATGCGCTGTG CCGGCCGTCC GGCCACCACG CCCACGCTGA CCGCGCAGGC
GGGTTCTGCT ACGTCAACAA CTCGGCGATC GCCGCGCAGA CACTGCTGGA GCGCTTCGAC
AAGGTCGCCG TGCTCGACGT GGACGCCCAT CATGGCGATG GCACGCAGCA GATCTTCTAC
CAGCGTTCCG ACGTGATGAC GATTTCGCTG CACGCGGACC CCAGCAGCTA CTACCCGTTT
TACACGGGCT ACGCCACCGA GCGCGGTCAT GGCGCGGGCT ATGGCTACAA CCTCAATTTC
CCGCTGCCGC ACGGCACAGG CGATGCTGGA TTCCTGTCGG CGCTGGACAG CGCGCTCGAT
GCGCTGCGCG ACTACCGTCC GCAGGCGCTG GTGCTGGCGC TTGGCTTCGA CACGTACAAG
CACGACCCGA TCAGCGTGCT GCAGGTGGGG CTGGAAGCCT ATCGGGGCGT GGGCGAGCGT
ATCCACGCGC TGGGCGTGCC GACGGTGGTG GTGCAGGAGG GCGGTTACGA AGTGGATGCG
ATCGGTATCG CGCTGGAAGC ATTTCTCGCG GGCTTCGTGC CTGCGATGGC ATGA
|
|---|
| Protein sequence | MRAFFSDDQL LHQPRQFMRA GRLCEPTDVP ARAAVLQRAL DARGIELVAP PDYGRAPLET
VHSPAYLDFL TSAFERWMAQ ATPTLEPGIE VLPNLSPYHS GKIDKTRRGP CPSGSVIAEA
GYYLGDLSCP LGPHSWQSIL RSAHSAVAAA RHVCAPHDGN GMAYALCRPS GHHAHADRAG
GFCYVNNSAI AAQTLLERFD KVAVLDVDAH HGDGTQQIFY QRSDVMTISL HADPSSYYPF
YTGYATERGH GAGYGYNLNF PLPHGTGDAG FLSALDSALD ALRDYRPQAL VLALGFDTYK
HDPISVLQVG LEAYRGVGER IHALGVPTVV VQEGGYEVDA IGIALEAFLA GFVPAMA
|
|---|
| |