Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_1620 |
Symbol | |
ID | 4038423 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | + |
Start bp | 1746621 |
End bp | 1748324 |
Gene Length | 1704 bp |
Protein Length | 567 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637977004 |
Product | thiamine pyrophosphate protein |
Protein accession | YP_583772 |
Protein GI | 94310562 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.738779 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCGC CACGCGAACG GAATGGCGGC CAGATTCTGG TCGAACAGCT GCGCATCCAG GGCACGAAGC GCGTGTTCCT GGTGCCGGGC GAGAGCTATC TGCCGTGCAT CGACGCGCTC TACGACCATC AGGATGCGAT CACGCCGATC GTCTGCCGGC AGGAGAGCGG CGCCGGATAC ATGGCGGAGG CCTACGGCAA GCTGACCGGC GAGCCCGGCG TCTGTTTTGT CACGCGCGGC CCGGGGGCGA CCAATGCGAG CATCGCGGTG CATACGGCGT TTCAGGACTC CACACCGATG ATCCTGTTCG TCGGTCAGGT TGGAAACGAC TTCTACGAGC GCGAGGCATT CCAGGAGATC GACTACCGTC GCATGTTCGG CCAGATGGCC AAGTGGGTGG CCCAGATCGA TCGCACGGAC CGGATCCCCG AGTTCGTGGC GCGAGCCTAC GCGGTCGCAA CCAGCGGGCG TCCCGGTCCG GTGGTGCTGG CGTTGCCCGA GGACACGCTC TGGGGCCGCG CCACGGTCGC CGACATGCCG CGTTATGAGC GCGTCCACGG CGCCCCGACG CCGGTGGCGC TCGACAAGCT CTCCACCTTG CTGGCTGGCG CGAAGCGGCC GTTCCTGCTG GTCGGGGGCT CGGGCTGGAC GCCCACGGCC ATGCGGCAGA TCGAAGGCTT TGCCGAACGC TTCGGCCTGC CCGTGGGTGT GGCATGGCGA CGTCTGGAAT GCTTCGACAA CGGACATCCG AACTTCGCCG GCCACGTCGG TTGGGGGATG GTCGATGCGC TGCGCCAGCG GATTCACGAA GCGGATCTGG TGATCGCCGT GGGCACGCGC ATGGGCGAGG CCACCACGGA AGGCTACACG CTGGTGGAAA GCCCGCAGCC ACGGCAGAAG CTGGTGCACG TGTATCCCGA TCCGGACGAA CTCGGCCGGG TATTCCGCCC GACGTTGCCG ATTGCCGCCG ATGTGGTGTC GTTCGCGGCG GCCGTGGCGC AGCTATCTCC GGCGCAGACG GTATCCCGAG AGGCGATGAC GGCGGTGACG GCGGCCAATG CCAACTTCCT GGCGGAGCAG GAGCCCAAGG ACGCCCCCGG CGCGTTGAAC CTGAACCGGG TGGCCTGCCA CGTGCGCGAC CACGTGCCGG ACGATGCCTG CATCACTGTC GGCGCAGGCA ACTATGCGTT GTTCGCGCAC GCCTATCACC GCTTCCATGG CGTGGGCACG AGCCTGGCGC CGACGGTAGG GTCGATGGGT TACGGCTTGC CGGCCGCAAT CTCGGCCAAG CTCGAGAATC CGTCGCGTAC CGTGGTCTGC TACGCGGGCG ATGGCTGCTT CCAGATGAAC CTGCAGGAAC TCGGCGTGGC CATGCAGTAT CGGCTGGGCA TCGTGATCCT TGTTTTCAAC AACGGCATGT GGGGCACGAT CCGCGCGCAT CAGGAACGCG AGTTCCCGGG CCGCACGATT GCGCTCGGCT TCGACAATCC CGAGTTCAGC CAGCTGGTCA AGGCGTATCA CGGCCACGGC GAAGTGGTGG ATCGCGATGA GGATTTCGCC CCCGCCTTTG CCCGGGCGCT GGAATTCGCC AATCGCGAGC AACTCCCCGC GCTGATCGAG CTGCGCTACG AACCCGATGG TATCGCGCCC GGCGTCACGC TCTCCGGCAT TCGTGCCGCA GCGCTGGCGC GGCAATCCGC CTGA
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Protein sequence | MSAPRERNGG QILVEQLRIQ GTKRVFLVPG ESYLPCIDAL YDHQDAITPI VCRQESGAGY MAEAYGKLTG EPGVCFVTRG PGATNASIAV HTAFQDSTPM ILFVGQVGND FYEREAFQEI DYRRMFGQMA KWVAQIDRTD RIPEFVARAY AVATSGRPGP VVLALPEDTL WGRATVADMP RYERVHGAPT PVALDKLSTL LAGAKRPFLL VGGSGWTPTA MRQIEGFAER FGLPVGVAWR RLECFDNGHP NFAGHVGWGM VDALRQRIHE ADLVIAVGTR MGEATTEGYT LVESPQPRQK LVHVYPDPDE LGRVFRPTLP IAADVVSFAA AVAQLSPAQT VSREAMTAVT AANANFLAEQ EPKDAPGALN LNRVACHVRD HVPDDACITV GAGNYALFAH AYHRFHGVGT SLAPTVGSMG YGLPAAISAK LENPSRTVVC YAGDGCFQMN LQELGVAMQY RLGIVILVFN NGMWGTIRAH QEREFPGRTI ALGFDNPEFS QLVKAYHGHG EVVDRDEDFA PAFARALEFA NREQLPALIE LRYEPDGIAP GVTLSGIRAA ALARQSA
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